Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24702 | 3' | -57.3 | NC_005264.1 | + | 93059 | 0.66 | 0.883635 |
Target: 5'- aGGGCUgucugCUGcGGGAgGGGCCGCGGcGAc- -3' miRNA: 3'- -CUUGA-----GAC-CCUUgCUCGGCGCC-CUcu -5' |
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24702 | 3' | -57.3 | NC_005264.1 | + | 30437 | 0.66 | 0.876657 |
Target: 5'- gGAGgUCUcGGGG--GAGCCGCGGGc-- -3' miRNA: 3'- -CUUgAGA-CCCUugCUCGGCGCCCucu -5' |
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24702 | 3' | -57.3 | NC_005264.1 | + | 149464 | 0.66 | 0.876657 |
Target: 5'- gGAGgUCUcGGGG--GAGCCGCGGGc-- -3' miRNA: 3'- -CUUgAGA-CCCUugCUCGGCGCCCucu -5' |
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24702 | 3' | -57.3 | NC_005264.1 | + | 882 | 0.66 | 0.874522 |
Target: 5'- cGGACguacgaCUGGGuGuacggccccgugucGCGGGCCGCuGGGGGGa -3' miRNA: 3'- -CUUGa-----GACCC-U--------------UGCUCGGCG-CCCUCU- -5' |
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24702 | 3' | -57.3 | NC_005264.1 | + | 119908 | 0.66 | 0.874522 |
Target: 5'- cGGACguacgaCUGGGuGuacggccccgugucGCGGGCCGCuGGGGGGa -3' miRNA: 3'- -CUUGa-----GACCC-U--------------UGCUCGGCG-CCCUCU- -5' |
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24702 | 3' | -57.3 | NC_005264.1 | + | 98393 | 0.66 | 0.869466 |
Target: 5'- aGGCUacaGGGAGuuaGAGCCGCGGcAGAc -3' miRNA: 3'- cUUGAga-CCCUUg--CUCGGCGCCcUCU- -5' |
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24702 | 3' | -57.3 | NC_005264.1 | + | 160886 | 0.67 | 0.844297 |
Target: 5'- gGAGCUCggggggGGGGGCaacGGCCGCGcacagacucuugccGGAGGa -3' miRNA: 3'- -CUUGAGa-----CCCUUGc--UCGGCGC--------------CCUCU- -5' |
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24702 | 3' | -57.3 | NC_005264.1 | + | 41860 | 0.67 | 0.844297 |
Target: 5'- gGAGCUCggggggGGGGGCaacGGCCGCGcacagacucuugccGGAGGa -3' miRNA: 3'- -CUUGAGa-----CCCUUGc--UCGGCGC--------------CCUCU- -5' |
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24702 | 3' | -57.3 | NC_005264.1 | + | 19268 | 0.67 | 0.838688 |
Target: 5'- cGGGCcCcGGGGACggcaGAGUCGgGGGAGGg -3' miRNA: 3'- -CUUGaGaCCCUUG----CUCGGCgCCCUCU- -5' |
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24702 | 3' | -57.3 | NC_005264.1 | + | 27921 | 0.67 | 0.838688 |
Target: 5'- cGAGCUcCUGGGGACGAGCaguucccaaCGGGc-- -3' miRNA: 3'- -CUUGA-GACCCUUGCUCGgc-------GCCCucu -5' |
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24702 | 3' | -57.3 | NC_005264.1 | + | 112353 | 0.67 | 0.83052 |
Target: 5'- cAGCUUUGGGGAUuuuGCCGCGGuccuguccGAGGa -3' miRNA: 3'- cUUGAGACCCUUGcu-CGGCGCC--------CUCU- -5' |
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24702 | 3' | -57.3 | NC_005264.1 | + | 107613 | 0.67 | 0.822176 |
Target: 5'- uGACaugCUGcGccUGGGCCGCGGGAGAa -3' miRNA: 3'- cUUGa--GACcCuuGCUCGGCGCCCUCU- -5' |
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24702 | 3' | -57.3 | NC_005264.1 | + | 119119 | 0.67 | 0.822176 |
Target: 5'- cGGGCUCUgcuggGGGAggGCGAGgaCGCauggGGGAGAa -3' miRNA: 3'- -CUUGAGA-----CCCU--UGCUCg-GCG----CCCUCU- -5' |
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24702 | 3' | -57.3 | NC_005264.1 | + | 43263 | 0.67 | 0.804992 |
Target: 5'- -cGCUCgggcauagGGGAGgGAacGCCGCGGGucuGAu -3' miRNA: 3'- cuUGAGa-------CCCUUgCU--CGGCGCCCu--CU- -5' |
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24702 | 3' | -57.3 | NC_005264.1 | + | 162290 | 0.67 | 0.804992 |
Target: 5'- -cGCUCgggcauagGGGAGgGAacGCCGCGGGucuGAu -3' miRNA: 3'- cuUGAGa-------CCCUUgCU--CGGCGCCCu--CU- -5' |
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24702 | 3' | -57.3 | NC_005264.1 | + | 118635 | 0.67 | 0.804992 |
Target: 5'- cAGCUCUGGGGAgGGG--GgGGGGGAa -3' miRNA: 3'- cUUGAGACCCUUgCUCggCgCCCUCU- -5' |
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24702 | 3' | -57.3 | NC_005264.1 | + | 149914 | 0.68 | 0.787198 |
Target: 5'- --uCUCgaucGGGGACGcGUCGgGGGAGGa -3' miRNA: 3'- cuuGAGa---CCCUUGCuCGGCgCCCUCU- -5' |
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24702 | 3' | -57.3 | NC_005264.1 | + | 30888 | 0.68 | 0.787198 |
Target: 5'- --uCUCgaucGGGGACGcGUCGgGGGAGGa -3' miRNA: 3'- cuuGAGa---CCCUUGCuCGGCgCCCUCU- -5' |
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24702 | 3' | -57.3 | NC_005264.1 | + | 102918 | 0.68 | 0.750051 |
Target: 5'- gGAACUCUuGGc-CGAGCUGCGcGGAGc -3' miRNA: 3'- -CUUGAGAcCCuuGCUCGGCGC-CCUCu -5' |
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24702 | 3' | -57.3 | NC_005264.1 | + | 73595 | 0.69 | 0.74049 |
Target: 5'- gGAAgUUUGGGGugGGGCCGCaGGc-- -3' miRNA: 3'- -CUUgAGACCCUugCUCGGCGcCCucu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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