miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24702 5' -59.2 NC_005264.1 + 8044 0.66 0.821293
Target:  5'- gCGcCCUCCGCCUCuUCAcccACgucgCGGCc -3'
miRNA:   3'- -GCaGGAGGCGGAGcAGUc--UGa---GCCGa -5'
24702 5' -59.2 NC_005264.1 + 127071 0.66 0.821293
Target:  5'- gCGcCCUCCGCCUCuUCAcccACgucgCGGCc -3'
miRNA:   3'- -GCaGGAGGCGGAGcAGUc--UGa---GCCGa -5'
24702 5' -59.2 NC_005264.1 + 3175 0.66 0.804414
Target:  5'- gCGUCCUUgGCCUUGUCAaaGAaccUGGCc -3'
miRNA:   3'- -GCAGGAGgCGGAGCAGU--CUga-GCCGa -5'
24702 5' -59.2 NC_005264.1 + 94394 0.66 0.804414
Target:  5'- gGcCCUCCGCg-CG-CAGACcgCGGCg -3'
miRNA:   3'- gCaGGAGGCGgaGCaGUCUGa-GCCGa -5'
24702 5' -59.2 NC_005264.1 + 61005 0.66 0.795751
Target:  5'- uCGUUCUCUGCCUCGgc---UUCGGCc -3'
miRNA:   3'- -GCAGGAGGCGGAGCagucuGAGCCGa -5'
24702 5' -59.2 NC_005264.1 + 7655 0.66 0.795751
Target:  5'- cCG-CCUgCCGgCUCGgaGGGCUCGGCc -3'
miRNA:   3'- -GCaGGA-GGCgGAGCagUCUGAGCCGa -5'
24702 5' -59.2 NC_005264.1 + 126682 0.66 0.795751
Target:  5'- cCG-CCUgCCGgCUCGgaGGGCUCGGCc -3'
miRNA:   3'- -GCaGGA-GGCgGAGCagUCUGAGCCGa -5'
24702 5' -59.2 NC_005264.1 + 50125 0.66 0.790487
Target:  5'- gCGUCCaucgaauugUCCGUCauggcuccgaacaggUCGUCGaGCUCGGCa -3'
miRNA:   3'- -GCAGG---------AGGCGG---------------AGCAGUcUGAGCCGa -5'
24702 5' -59.2 NC_005264.1 + 123862 0.66 0.786951
Target:  5'- gGUgUUCCGCCaggCGgcacagagUAGGCUCGGCc -3'
miRNA:   3'- gCAgGAGGCGGa--GCa-------GUCUGAGCCGa -5'
24702 5' -59.2 NC_005264.1 + 4836 0.66 0.786951
Target:  5'- gGUgUUCCGCCaggCGgcacagagUAGGCUCGGCc -3'
miRNA:   3'- gCAgGAGGCGGa--GCa-------GUCUGAGCCGa -5'
24702 5' -59.2 NC_005264.1 + 126324 0.67 0.750525
Target:  5'- -cUCCUgcgcCCGCCUCGUCgAGGCcgCGcGCUu -3'
miRNA:   3'- gcAGGA----GGCGGAGCAG-UCUGa-GC-CGA- -5'
24702 5' -59.2 NC_005264.1 + 15859 0.67 0.741154
Target:  5'- uCGUCCUCauCCUCGUC---UUCGGCg -3'
miRNA:   3'- -GCAGGAGgcGGAGCAGucuGAGCCGa -5'
24702 5' -59.2 NC_005264.1 + 22225 0.67 0.731694
Target:  5'- aGUCg-UCGCCUCGUCGGcgguCUgGGCg -3'
miRNA:   3'- gCAGgaGGCGGAGCAGUCu---GAgCCGa -5'
24702 5' -59.2 NC_005264.1 + 59910 0.67 0.731694
Target:  5'- aCGUUUUCCGCUcCGcgCAG-CUCGGCc -3'
miRNA:   3'- -GCAGGAGGCGGaGCa-GUCuGAGCCGa -5'
24702 5' -59.2 NC_005264.1 + 992 0.68 0.71254
Target:  5'- uGggCCUCCcCCUCG-CGGAC-CGGCg -3'
miRNA:   3'- gCa-GGAGGcGGAGCaGUCUGaGCCGa -5'
24702 5' -59.2 NC_005264.1 + 24562 0.68 0.683349
Target:  5'- -cUCUUuuGCCguUCGUCucuagAGACUCGGCg -3'
miRNA:   3'- gcAGGAggCGG--AGCAG-----UCUGAGCCGa -5'
24702 5' -59.2 NC_005264.1 + 40881 0.69 0.653801
Target:  5'- cCGUCUUCCcGUC-CGUCucGCUCGGCg -3'
miRNA:   3'- -GCAGGAGG-CGGaGCAGucUGAGCCGa -5'
24702 5' -59.2 NC_005264.1 + 159907 0.69 0.653801
Target:  5'- cCGUCUUCCcGUC-CGUCucGCUCGGCg -3'
miRNA:   3'- -GCAGGAGG-CGGaGCAGucUGAGCCGa -5'
24702 5' -59.2 NC_005264.1 + 137512 0.69 0.644899
Target:  5'- uCGUCCggCCGCCggauuuuuugcuagGUCGGcCUCGGCg -3'
miRNA:   3'- -GCAGGa-GGCGGag------------CAGUCuGAGCCGa -5'
24702 5' -59.2 NC_005264.1 + 42125 0.69 0.64391
Target:  5'- cCGUCCUCCGCC-CGaccgCcGGCuuugUCGGCg -3'
miRNA:   3'- -GCAGGAGGCGGaGCa---GuCUG----AGCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.