miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24703 3' -60 NC_005264.1 + 85023 0.66 0.817161
Target:  5'- aCUGuCCUCUUCGUCCGCGcCGUcaauGCCGu -3'
miRNA:   3'- -GGC-GGAGAAGUGGGUGCaGCGc---CGGC- -5'
24703 3' -60 NC_005264.1 + 127833 0.66 0.817161
Target:  5'- gCGCucCUCUUCgaGCgCCGC-UCGCGGCaCGg -3'
miRNA:   3'- gGCG--GAGAAG--UG-GGUGcAGCGCCG-GC- -5'
24703 3' -60 NC_005264.1 + 146555 0.66 0.817161
Target:  5'- cCCaGCCUCUaCAUCCugGUCGUGaagaUCGa -3'
miRNA:   3'- -GG-CGGAGAaGUGGGugCAGCGCc---GGC- -5'
24703 3' -60 NC_005264.1 + 79612 0.66 0.817161
Target:  5'- gCgGCCUagaCGCCCACG-CGCaacGGCCc -3'
miRNA:   3'- -GgCGGAgaaGUGGGUGCaGCG---CCGGc -5'
24703 3' -60 NC_005264.1 + 30354 0.66 0.817161
Target:  5'- gCUGCC-CUgCGgCCACGUgGCuGCCGu -3'
miRNA:   3'- -GGCGGaGAaGUgGGUGCAgCGcCGGC- -5'
24703 3' -60 NC_005264.1 + 38738 0.66 0.817161
Target:  5'- cUCGCCga-UCGCCCguaACGUgGCGaGCCc -3'
miRNA:   3'- -GGCGGagaAGUGGG---UGCAgCGC-CGGc -5'
24703 3' -60 NC_005264.1 + 133379 0.66 0.817161
Target:  5'- aCCGCCcCccaAUCCGCGUgG-GGCCGa -3'
miRNA:   3'- -GGCGGaGaagUGGGUGCAgCgCCGGC- -5'
24703 3' -60 NC_005264.1 + 48696 0.66 0.817161
Target:  5'- uCUGCUcgUCgcggUCGCUCGCGggagaugagGCGGCCGg -3'
miRNA:   3'- -GGCGG--AGa---AGUGGGUGCag-------CGCCGGC- -5'
24703 3' -60 NC_005264.1 + 119166 0.66 0.817161
Target:  5'- gCCGCCgg--CACCaaagaACGguucaGCGGCCa -3'
miRNA:   3'- -GGCGGagaaGUGGg----UGCag---CGCCGGc -5'
24703 3' -60 NC_005264.1 + 8807 0.66 0.817161
Target:  5'- gCGCucCUCUUCgaGCgCCGC-UCGCGGCaCGg -3'
miRNA:   3'- gGCG--GAGAAG--UG-GGUGcAGCGCCG-GC- -5'
24703 3' -60 NC_005264.1 + 79886 0.66 0.816335
Target:  5'- aUCGCCggcucaggccuggUCUUUGCgUGCG-CGUGGCCGa -3'
miRNA:   3'- -GGCGG-------------AGAAGUGgGUGCaGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 32573 0.66 0.808837
Target:  5'- gCCGCCgcaacgUCgcgCACCCGCGcccaaaagguUCGaaaGGCCa -3'
miRNA:   3'- -GGCGG------AGaa-GUGGGUGC----------AGCg--CCGGc -5'
24703 3' -60 NC_005264.1 + 85084 0.66 0.808837
Target:  5'- uCCGCCg---CACCguuUGUgGUGGCCGg -3'
miRNA:   3'- -GGCGGagaaGUGGgu-GCAgCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 59088 0.66 0.808837
Target:  5'- cCCGCCUCagcaugaACCUaaGCaUgGCGGCCGc -3'
miRNA:   3'- -GGCGGAGaag----UGGG--UGcAgCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 104201 0.66 0.806311
Target:  5'- uCCGCC-CUUCAcaguaaaccguuauCCUACG-CGCaGCCa -3'
miRNA:   3'- -GGCGGaGAAGU--------------GGGUGCaGCGcCGGc -5'
24703 3' -60 NC_005264.1 + 118159 0.66 0.800367
Target:  5'- aUGCCguggcCGCCCAUGUCugGCGGCuCGu -3'
miRNA:   3'- gGCGGagaa-GUGGGUGCAG--CGCCG-GC- -5'
24703 3' -60 NC_005264.1 + 15070 0.66 0.800367
Target:  5'- gCgGCCgaucgCACCUAUGUCGCGcGCUu -3'
miRNA:   3'- -GgCGGagaa-GUGGGUGCAGCGC-CGGc -5'
24703 3' -60 NC_005264.1 + 159960 0.66 0.800367
Target:  5'- cCCGCCgcgCcgCGCCCcgguCGaUCGCaGCCGc -3'
miRNA:   3'- -GGCGGa--GaaGUGGGu---GC-AGCGcCGGC- -5'
24703 3' -60 NC_005264.1 + 159227 0.66 0.800367
Target:  5'- cCCGCCcacagCGCCCAcCGUCcaccaCGGCCu -3'
miRNA:   3'- -GGCGGagaa-GUGGGU-GCAGc----GCCGGc -5'
24703 3' -60 NC_005264.1 + 40933 0.66 0.800367
Target:  5'- cCCGCCgcgCcgCGCCCcgguCGaUCGCaGCCGc -3'
miRNA:   3'- -GGCGGa--GaaGUGGGu---GC-AGCGcCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.