miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24703 3' -60 NC_005264.1 + 85023 0.66 0.817161
Target:  5'- aCUGuCCUCUUCGUCCGCGcCGUcaauGCCGu -3'
miRNA:   3'- -GGC-GGAGAAGUGGGUGCaGCGc---CGGC- -5'
24703 3' -60 NC_005264.1 + 70261 0.66 0.774154
Target:  5'- cCCGCgUCggCGuaaaaCCugGUCuGCGGCUGa -3'
miRNA:   3'- -GGCGgAGaaGUg----GGugCAG-CGCCGGC- -5'
24703 3' -60 NC_005264.1 + 30198 0.66 0.774154
Target:  5'- gCCGCCcCU--GCCCGCGUcccgacCGCGaucGCCGg -3'
miRNA:   3'- -GGCGGaGAagUGGGUGCA------GCGC---CGGC- -5'
24703 3' -60 NC_005264.1 + 4143 0.66 0.774154
Target:  5'- gCCGCUUgucgcgaugCUUgcCGCCCACGcCGCGGUg- -3'
miRNA:   3'- -GGCGGA---------GAA--GUGGGUGCaGCGCCGgc -5'
24703 3' -60 NC_005264.1 + 151443 0.66 0.772368
Target:  5'- -aGCUUCaauaucacuaaCAUCCGCGaCGCGGCCGc -3'
miRNA:   3'- ggCGGAGaa---------GUGGGUGCaGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 123170 0.66 0.774154
Target:  5'- gCCGCUUgucgcgaugCUUgcCGCCCACGcCGCGGUg- -3'
miRNA:   3'- -GGCGGA---------GAA--GUGGGUGCaGCGCCGgc -5'
24703 3' -60 NC_005264.1 + 149225 0.66 0.774154
Target:  5'- gCCGCCcCU--GCCCGCGUcccgacCGCGaucGCCGg -3'
miRNA:   3'- -GGCGGaGAagUGGGUGCA------GCGC---CGGC- -5'
24703 3' -60 NC_005264.1 + 62741 0.66 0.774154
Target:  5'- aCCGCgUCgUCGCUgaGCccCGCGGCCGc -3'
miRNA:   3'- -GGCGgAGaAGUGGg-UGcaGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 67435 0.66 0.774154
Target:  5'- cCCGCCuaUCUgaaGCCCcuGCaccagCGCGGCCa -3'
miRNA:   3'- -GGCGG--AGAag-UGGG--UGca---GCGCCGGc -5'
24703 3' -60 NC_005264.1 + 65829 0.66 0.783018
Target:  5'- gCCGCCUCUUCguGCUC-CGUagcuuuaguaaaCGCGuGUCGa -3'
miRNA:   3'- -GGCGGAGAAG--UGGGuGCA------------GCGC-CGGC- -5'
24703 3' -60 NC_005264.1 + 38537 0.66 0.783018
Target:  5'- gCCGCCg---C-CCCGcCGUC-CGGCCGc -3'
miRNA:   3'- -GGCGGagaaGuGGGU-GCAGcGCCGGC- -5'
24703 3' -60 NC_005264.1 + 157783 0.66 0.790889
Target:  5'- uCgGCgUCUUCccagcuaggcggcGCCCACGacgcggaaccUCGUGGCCu -3'
miRNA:   3'- -GgCGgAGAAG-------------UGGGUGC----------AGCGCCGGc -5'
24703 3' -60 NC_005264.1 + 48696 0.66 0.817161
Target:  5'- uCUGCUcgUCgcggUCGCUCGCGggagaugagGCGGCCGg -3'
miRNA:   3'- -GGCGG--AGa---AGUGGGUGCag-------CGCCGGC- -5'
24703 3' -60 NC_005264.1 + 8807 0.66 0.817161
Target:  5'- gCGCucCUCUUCgaGCgCCGC-UCGCGGCaCGg -3'
miRNA:   3'- gGCG--GAGAAG--UG-GGUGcAGCGCCG-GC- -5'
24703 3' -60 NC_005264.1 + 119166 0.66 0.817161
Target:  5'- gCCGCCgg--CACCaaagaACGguucaGCGGCCa -3'
miRNA:   3'- -GGCGGagaaGUGGg----UGCag---CGCCGGc -5'
24703 3' -60 NC_005264.1 + 104201 0.66 0.806311
Target:  5'- uCCGCC-CUUCAcaguaaaccguuauCCUACG-CGCaGCCa -3'
miRNA:   3'- -GGCGGaGAAGU--------------GGGUGCaGCGcCGGc -5'
24703 3' -60 NC_005264.1 + 159227 0.66 0.800367
Target:  5'- cCCGCCcacagCGCCCAcCGUCcaccaCGGCCu -3'
miRNA:   3'- -GGCGGagaa-GUGGGU-GCAGc----GCCGGc -5'
24703 3' -60 NC_005264.1 + 40933 0.66 0.800367
Target:  5'- cCCGCCgcgCcgCGCCCcgguCGaUCGCaGCCGc -3'
miRNA:   3'- -GGCGGa--GaaGUGGGu---GC-AGCGcCGGC- -5'
24703 3' -60 NC_005264.1 + 15070 0.66 0.800367
Target:  5'- gCgGCCgaucgCACCUAUGUCGCGcGCUu -3'
miRNA:   3'- -GgCGGagaa-GUGGGUGCAGCGC-CGGc -5'
24703 3' -60 NC_005264.1 + 118808 0.66 0.799512
Target:  5'- gCgGCCUCUaCGCCCAacggcuggacgcaUGagGCGGCUa -3'
miRNA:   3'- -GgCGGAGAaGUGGGU-------------GCagCGCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.