Results 41 - 60 of 149 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24703 | 3' | -60 | NC_005264.1 | + | 58693 | 0.67 | 0.737625 |
Target: 5'- cCCgGCCUCUaugaCGgCCGCGUUuacuaggcggGCGGCCa -3' miRNA: 3'- -GG-CGGAGAa---GUgGGUGCAG----------CGCCGGc -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 62825 | 0.67 | 0.745054 |
Target: 5'- gCCGCCgcggccuUCUUUAuuUCCGCGUCGCGuuucgucGCCu -3' miRNA: 3'- -GGCGG-------AGAAGU--GGGUGCAGCGC-------CGGc -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 72003 | 0.67 | 0.718826 |
Target: 5'- gCUGUUUCUU-GCUCgACGUgCGCGGCCGc -3' miRNA: 3'- -GGCGGAGAAgUGGG-UGCA-GCGCCGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 124266 | 0.67 | 0.757002 |
Target: 5'- gCgGCCUCggguacguuuagagCGCCgGgaggcgaGUCGCGGCCGg -3' miRNA: 3'- -GgCGGAGaa------------GUGGgUg------CAGCGCCGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 149416 | 0.67 | 0.756089 |
Target: 5'- gCGUCUCggCGgCgGCgGUCGCGcGCCGg -3' miRNA: 3'- gGCGGAGaaGUgGgUG-CAGCGC-CGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 7529 | 0.67 | 0.756089 |
Target: 5'- uCCGcCCUCUccUCGCCUACGcaCGaggaCGGCCu -3' miRNA: 3'- -GGC-GGAGA--AGUGGGUGCa-GC----GCCGGc -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 35813 | 0.67 | 0.756089 |
Target: 5'- gCGCCUCUgccggC-CCCGCaaUgGCGGCCc -3' miRNA: 3'- gGCGGAGAa----GuGGGUGc-AgCGCCGGc -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 37166 | 0.67 | 0.746903 |
Target: 5'- uCUGCCggagCUUCcggacauguGCCCcCG-CGUGGCCGu -3' miRNA: 3'- -GGCGGa---GAAG---------UGGGuGCaGCGCCGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 20236 | 0.67 | 0.746903 |
Target: 5'- -aGCC-CggcgUGgCCAuCGUCGCGGCCGg -3' miRNA: 3'- ggCGGaGaa--GUgGGU-GCAGCGCCGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 77932 | 0.67 | 0.746903 |
Target: 5'- cCUGgCUCUUCccGCCCuccCGUCcugcGCGGCCc -3' miRNA: 3'- -GGCgGAGAAG--UGGGu--GCAG----CGCCGGc -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 43670 | 0.67 | 0.746903 |
Target: 5'- gCGCUgcg-CGCCgGCGUUaagGCGGCCGc -3' miRNA: 3'- gGCGGagaaGUGGgUGCAG---CGCCGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 87119 | 0.67 | 0.744128 |
Target: 5'- -gGCCUCcggCGCCCGCGgggcgcaccagucuUCGC-GCCGa -3' miRNA: 3'- ggCGGAGaa-GUGGGUGC--------------AGCGcCGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 138659 | 0.67 | 0.737625 |
Target: 5'- gCGCCagaCUUUACCgAC--CGCGGCCGc -3' miRNA: 3'- gGCGGa--GAAGUGGgUGcaGCGCCGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 30389 | 0.67 | 0.756089 |
Target: 5'- gCGUCUCggCGgCgGCgGUCGCGcGCCGg -3' miRNA: 3'- gGCGGAGaaGUgGgUG-CAGCGC-CGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 82844 | 0.67 | 0.737625 |
Target: 5'- gCGCCUCcUCuuCCg---CGCGGCCGg -3' miRNA: 3'- gGCGGAGaAGugGGugcaGCGCCGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 119473 | 0.67 | 0.746903 |
Target: 5'- gCGUCUCg-UACCUAUG-CGCGGUCGu -3' miRNA: 3'- gGCGGAGaaGUGGGUGCaGCGCCGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 156193 | 0.67 | 0.746903 |
Target: 5'- uCUGCCggagCUUCcggacauguGCCCcCG-CGUGGCCGu -3' miRNA: 3'- -GGCGGa---GAAG---------UGGGuGCaGCGCCGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 154839 | 0.67 | 0.756089 |
Target: 5'- gCGCCUCUgccggC-CCCGCaaUgGCGGCCc -3' miRNA: 3'- gGCGGAGAa----GuGGGUGc-AgCGCCGGc -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 126556 | 0.67 | 0.756089 |
Target: 5'- uCCGcCCUCUccUCGCCUACGcaCGaggaCGGCCu -3' miRNA: 3'- -GGC-GGAGA--AGUGGGUGCa-GC----GCCGGc -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 117499 | 0.67 | 0.756089 |
Target: 5'- uUCGCCUCgucucgggCGCggCGCGUCuGCGGUCGc -3' miRNA: 3'- -GGCGGAGaa------GUGg-GUGCAG-CGCCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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