miRNA display CGI


Results 61 - 80 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24703 3' -60 NC_005264.1 + 33914 0.67 0.768781
Target:  5'- gCCGCCUU-UCugCCGCcaggcugggaaggccGUgGCGcGCCGg -3'
miRNA:   3'- -GGCGGAGaAGugGGUG---------------CAgCGC-CGGC- -5'
24703 3' -60 NC_005264.1 + 43670 0.67 0.746903
Target:  5'- gCGCUgcg-CGCCgGCGUUaagGCGGCCGc -3'
miRNA:   3'- gGCGGagaaGUGGgUGCAG---CGCCGGC- -5'
24703 3' -60 NC_005264.1 + 77932 0.67 0.746903
Target:  5'- cCUGgCUCUUCccGCCCuccCGUCcugcGCGGCCc -3'
miRNA:   3'- -GGCgGAGAAG--UGGGu--GCAG----CGCCGGc -5'
24703 3' -60 NC_005264.1 + 446 0.67 0.746903
Target:  5'- gCGUCUCg-UACCUAUG-CGCGGUCGu -3'
miRNA:   3'- gGCGGAGaaGUGGGUGCaGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 37166 0.67 0.746903
Target:  5'- uCUGCCggagCUUCcggacauguGCCCcCG-CGUGGCCGu -3'
miRNA:   3'- -GGCGGa---GAAG---------UGGGuGCaGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 20236 0.67 0.746903
Target:  5'- -aGCC-CggcgUGgCCAuCGUCGCGGCCGg -3'
miRNA:   3'- ggCGGaGaa--GUgGGU-GCAGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 154839 0.67 0.756089
Target:  5'- gCGCCUCUgccggC-CCCGCaaUgGCGGCCc -3'
miRNA:   3'- gGCGGAGAa----GuGGGUGc-AgCGCCGGc -5'
24703 3' -60 NC_005264.1 + 142 0.68 0.68048
Target:  5'- gCCGCCUUaaCGCCgGCGcgcaGCGcGCCGa -3'
miRNA:   3'- -GGCGGAGaaGUGGgUGCag--CGC-CGGC- -5'
24703 3' -60 NC_005264.1 + 51078 0.68 0.670784
Target:  5'- gCCGCCUag--ACCUGCuUCGCGGUCGc -3'
miRNA:   3'- -GGCGGAgaagUGGGUGcAGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 149847 0.68 0.670784
Target:  5'- uCCGCCUCgugcUCgaacggGCUCGCGUCGUcGUCGg -3'
miRNA:   3'- -GGCGGAGa---AG------UGGGUGCAGCGcCGGC- -5'
24703 3' -60 NC_005264.1 + 30821 0.68 0.670784
Target:  5'- uCCGCCUCgugcUCgaacggGCUCGCGUCGUcGUCGg -3'
miRNA:   3'- -GGCGGAGa---AG------UGGGUGCAGCGcCGGC- -5'
24703 3' -60 NC_005264.1 + 69072 0.68 0.690141
Target:  5'- aCGCCUU-UCGCCagauGCGaucUCGCGGUCGu -3'
miRNA:   3'- gGCGGAGaAGUGGg---UGC---AGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 46394 0.68 0.670784
Target:  5'- aCCGCCcCgaucgUCGCCCc---CGCGGCCa -3'
miRNA:   3'- -GGCGGaGa----AGUGGGugcaGCGCCGGc -5'
24703 3' -60 NC_005264.1 + 128021 0.68 0.68048
Target:  5'- -aGCCUCUgcagcaacaUCAUuagcgcuaCCGCGUCGaUGGCCGc -3'
miRNA:   3'- ggCGGAGA---------AGUG--------GGUGCAGC-GCCGGC- -5'
24703 3' -60 NC_005264.1 + 133876 0.68 0.68048
Target:  5'- uCCGCgCUCagagucuuggcgUUCACCCACGgcucguaCGCGGUa- -3'
miRNA:   3'- -GGCG-GAG------------AAGUGGGUGCa------GCGCCGgc -5'
24703 3' -60 NC_005264.1 + 96302 0.68 0.68048
Target:  5'- aUCGCCga--CGCCCGCaaCGCGGUCGu -3'
miRNA:   3'- -GGCGGagaaGUGGGUGcaGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 137240 0.68 0.68048
Target:  5'- uUCGUCUCgcCGCUCuCGUCcgGCGGCCa -3'
miRNA:   3'- -GGCGGAGaaGUGGGuGCAG--CGCCGGc -5'
24703 3' -60 NC_005264.1 + 114132 0.68 0.699757
Target:  5'- gCCGCCUCaUCuCCCGCGa-GCGaCCGc -3'
miRNA:   3'- -GGCGGAGaAGuGGGUGCagCGCcGGC- -5'
24703 3' -60 NC_005264.1 + 118910 0.68 0.699757
Target:  5'- aCCGCgUaCUUgGCCCucgACGUCGaggcgaCGGCCGc -3'
miRNA:   3'- -GGCGgA-GAAgUGGG---UGCAGC------GCCGGC- -5'
24703 3' -60 NC_005264.1 + 39646 0.68 0.709321
Target:  5'- uCCGCUUCccCACaCCGCGgCGUGGgCGg -3'
miRNA:   3'- -GGCGGAGaaGUG-GGUGCaGCGCCgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.