miRNA display CGI


Results 21 - 40 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24703 3' -60 NC_005264.1 + 117682 0.71 0.516395
Target:  5'- gCCGCgCUCUcCugCCuccGCGUCGUGGCg- -3'
miRNA:   3'- -GGCG-GAGAaGugGG---UGCAGCGCCGgc -5'
24703 3' -60 NC_005264.1 + 25545 0.71 0.488733
Target:  5'- gUGCCgua-CGCCCGCGUCGCcGCCa -3'
miRNA:   3'- gGCGGagaaGUGGGUGCAGCGcCGGc -5'
24703 3' -60 NC_005264.1 + 88507 0.7 0.554204
Target:  5'- aUCGCCUCUgagaUCACCgACGacgacUCGuUGGCCa -3'
miRNA:   3'- -GGCGGAGA----AGUGGgUGC-----AGC-GCCGGc -5'
24703 3' -60 NC_005264.1 + 78628 0.7 0.544666
Target:  5'- gCGCCUCUUCugUUAacCGcCGCGGCgGc -3'
miRNA:   3'- gGCGGAGAAGugGGU--GCaGCGCCGgC- -5'
24703 3' -60 NC_005264.1 + 128525 0.7 0.590845
Target:  5'- gCCGCCUCgaaggcgcuauagUUCcugugACCCACGUauauuucCGCGGCgGa -3'
miRNA:   3'- -GGCGGAG-------------AAG-----UGGGUGCA-------GCGCCGgC- -5'
24703 3' -60 NC_005264.1 + 68240 0.7 0.57342
Target:  5'- aCCGCCaagCcaUGCCCGCGcCGCGGgCGg -3'
miRNA:   3'- -GGCGGa--GaaGUGGGUGCaGCGCCgGC- -5'
24703 3' -60 NC_005264.1 + 62283 0.7 0.544666
Target:  5'- gCGCC-CUUguCCCGCGaUCuCGGCCGu -3'
miRNA:   3'- gGCGGaGAAguGGGUGC-AGcGCCGGC- -5'
24703 3' -60 NC_005264.1 + 134782 0.7 0.554204
Target:  5'- uUCGCUUCcgcgcgcuUUUACCCgGCGUCGCGcgcGCCGg -3'
miRNA:   3'- -GGCGGAG--------AAGUGGG-UGCAGCGC---CGGC- -5'
24703 3' -60 NC_005264.1 + 146168 0.7 0.56379
Target:  5'- aUGCCUCg-CAUgCACGUCGCguGGCCu -3'
miRNA:   3'- gGCGGAGaaGUGgGUGCAGCG--CCGGc -5'
24703 3' -60 NC_005264.1 + 32026 0.69 0.631786
Target:  5'- aCCGCCUCgggCugCCcCGgagUGCGaGCCa -3'
miRNA:   3'- -GGCGGAGaa-GugGGuGCa--GCGC-CGGc -5'
24703 3' -60 NC_005264.1 + 79138 0.69 0.635693
Target:  5'- gCCGCCgc--CACCgcauuucguguacuaCACG-CGCGGCCGg -3'
miRNA:   3'- -GGCGGagaaGUGG---------------GUGCaGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 37808 0.69 0.602513
Target:  5'- -aGCCUCccCGCCC--GUCGgGGCCGa -3'
miRNA:   3'- ggCGGAGaaGUGGGugCAGCgCCGGC- -5'
24703 3' -60 NC_005264.1 + 47002 0.69 0.631786
Target:  5'- cCUGCUUCUgaacagaCACCuCACGguggaaCGCGGCCu -3'
miRNA:   3'- -GGCGGAGAa------GUGG-GUGCa-----GCGCCGGc -5'
24703 3' -60 NC_005264.1 + 156834 0.69 0.602513
Target:  5'- -aGCCUCccCGCCC--GUCGgGGCCGa -3'
miRNA:   3'- ggCGGAGaaGUGGGugCAGCgCCGGC- -5'
24703 3' -60 NC_005264.1 + 4421 0.69 0.622019
Target:  5'- gUGCCccCUUCGCCgACGUCGUcaucgucugaGGCCu -3'
miRNA:   3'- gGCGGa-GAAGUGGgUGCAGCG----------CCGGc -5'
24703 3' -60 NC_005264.1 + 2856 0.69 0.631786
Target:  5'- gCGCCg--UCGCCCGC--UGCGGCUGc -3'
miRNA:   3'- gGCGGagaAGUGGGUGcaGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 128968 0.69 0.60154
Target:  5'- gCCGCCUCgagcggaCGCuCCACGUucuucagcucugcCGCGGCgCGc -3'
miRNA:   3'- -GGCGGAGaa-----GUG-GGUGCA-------------GCGCCG-GC- -5'
24703 3' -60 NC_005264.1 + 40144 0.69 0.651313
Target:  5'- gCCGCCgagaCggcCGCCCAuCGUCgagacgGCGGCCa -3'
miRNA:   3'- -GGCGGa---Gaa-GUGGGU-GCAG------CGCCGGc -5'
24703 3' -60 NC_005264.1 + 38174 0.69 0.651313
Target:  5'- aCCGCCgcgCUguggggaCACCUAgCGUcgCGCGGCCc -3'
miRNA:   3'- -GGCGGa--GAa------GUGGGU-GCA--GCGCCGGc -5'
24703 3' -60 NC_005264.1 + 94207 0.69 0.625925
Target:  5'- -aGCCUCgUCGCCUaccacGCGUugcuacgaugcgcuaCGCGGCCa -3'
miRNA:   3'- ggCGGAGaAGUGGG-----UGCA---------------GCGCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.