miRNA display CGI


Results 41 - 60 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24703 3' -60 NC_005264.1 + 156834 0.69 0.602513
Target:  5'- -aGCCUCccCGCCC--GUCGgGGCCGa -3'
miRNA:   3'- ggCGGAGaaGUGGGugCAGCgCCGGC- -5'
24703 3' -60 NC_005264.1 + 8758 0.69 0.621043
Target:  5'- gCGCCUCUUCcauaugaGCCUcuACGgcggCGCGGuuGu -3'
miRNA:   3'- gGCGGAGAAG-------UGGG--UGCa---GCGCCggC- -5'
24703 3' -60 NC_005264.1 + 27832 0.69 0.622019
Target:  5'- -gGCCUagaUCGCgCCACuGUCGCGGCgGc -3'
miRNA:   3'- ggCGGAga-AGUG-GGUG-CAGCGCCGgC- -5'
24703 3' -60 NC_005264.1 + 123448 0.69 0.622019
Target:  5'- gUGCCccCUUCGCCgACGUCGUcaucgucugaGGCCu -3'
miRNA:   3'- gGCGGa-GAAGUGGgUGCAGCG----------CCGGc -5'
24703 3' -60 NC_005264.1 + 159171 0.69 0.651313
Target:  5'- gCCGCCgagaCggcCGCCCAuCGUCgagacgGCGGCCa -3'
miRNA:   3'- -GGCGGa---Gaa-GUGGGU-GCAG------CGCCGGc -5'
24703 3' -60 NC_005264.1 + 151053 0.69 0.631786
Target:  5'- aCCGCCUCgggCugCCcCGgagUGCGaGCCa -3'
miRNA:   3'- -GGCGGAGaa-GugGGuGCa--GCGC-CGGc -5'
24703 3' -60 NC_005264.1 + 67376 0.69 0.641552
Target:  5'- cCCGCgCUCgcugCGCCCGCcggCGCGGUa- -3'
miRNA:   3'- -GGCG-GAGaa--GUGGGUGca-GCGCCGgc -5'
24703 3' -60 NC_005264.1 + 157201 0.69 0.651313
Target:  5'- aCCGCCgcgCUguggggaCACCUAgCGUcgCGCGGCCc -3'
miRNA:   3'- -GGCGGa--GAa------GUGGGU-GCA--GCGCCGGc -5'
24703 3' -60 NC_005264.1 + 139519 0.68 0.68048
Target:  5'- aCGCCUCUUCcuggagcagcaGCaugggCACGaUCGCGGCUu -3'
miRNA:   3'- gGCGGAGAAG-----------UGg----GUGC-AGCGCCGGc -5'
24703 3' -60 NC_005264.1 + 46394 0.68 0.670784
Target:  5'- aCCGCCcCgaucgUCGCCCc---CGCGGCCa -3'
miRNA:   3'- -GGCGGaGa----AGUGGGugcaGCGCCGGc -5'
24703 3' -60 NC_005264.1 + 43179 0.68 0.699757
Target:  5'- -aGCCUCUaUCgcgcuGCCUGCGaCGCGGgCCGg -3'
miRNA:   3'- ggCGGAGA-AG-----UGGGUGCaGCGCC-GGC- -5'
24703 3' -60 NC_005264.1 + 4005 0.68 0.68048
Target:  5'- aUGCCUCcUCGCCCACcaggggcuUgGCgGGCCGa -3'
miRNA:   3'- gGCGGAGaAGUGGGUGc-------AgCG-CCGGC- -5'
24703 3' -60 NC_005264.1 + 137240 0.68 0.68048
Target:  5'- uUCGUCUCgcCGCUCuCGUCcgGCGGCCa -3'
miRNA:   3'- -GGCGGAGaaGUGGGuGCAG--CGCCGGc -5'
24703 3' -60 NC_005264.1 + 96302 0.68 0.68048
Target:  5'- aUCGCCga--CGCCCGCaaCGCGGUCGu -3'
miRNA:   3'- -GGCGGagaaGUGGGUGcaGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 133876 0.68 0.68048
Target:  5'- uCCGCgCUCagagucuuggcgUUCACCCACGgcucguaCGCGGUa- -3'
miRNA:   3'- -GGCG-GAG------------AAGUGGGUGCa------GCGCCGgc -5'
24703 3' -60 NC_005264.1 + 128021 0.68 0.68048
Target:  5'- -aGCCUCUgcagcaacaUCAUuagcgcuaCCGCGUCGaUGGCCGc -3'
miRNA:   3'- ggCGGAGA---------AGUG--------GGUGCAGC-GCCGGC- -5'
24703 3' -60 NC_005264.1 + 142 0.68 0.68048
Target:  5'- gCCGCCUUaaCGCCgGCGcgcaGCGcGCCGa -3'
miRNA:   3'- -GGCGGAGaaGUGGgUGCag--CGC-CGGC- -5'
24703 3' -60 NC_005264.1 + 144776 0.68 0.68048
Target:  5'- aUGCC-CgcgCGCCCugGcUCGCGGCg- -3'
miRNA:   3'- gGCGGaGaa-GUGGGugC-AGCGCCGgc -5'
24703 3' -60 NC_005264.1 + 30821 0.68 0.670784
Target:  5'- uCCGCCUCgugcUCgaacggGCUCGCGUCGUcGUCGg -3'
miRNA:   3'- -GGCGGAGa---AG------UGGGUGCAGCGcCGGC- -5'
24703 3' -60 NC_005264.1 + 141474 0.68 0.690141
Target:  5'- -gGCCUCUUucCACCgGcCGagGCGGCCc -3'
miRNA:   3'- ggCGGAGAA--GUGGgU-GCagCGCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.