Results 61 - 80 of 149 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24703 | 3' | -60 | NC_005264.1 | + | 118910 | 0.68 | 0.699757 |
Target: 5'- aCCGCgUaCUUgGCCCucgACGUCGaggcgaCGGCCGc -3' miRNA: 3'- -GGCGgA-GAAgUGGG---UGCAGC------GCCGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 118984 | 0.68 | 0.699757 |
Target: 5'- uCCGUCUCUUC-CCCGCG--GCaGCCc -3' miRNA: 3'- -GGCGGAGAAGuGGGUGCagCGcCGGc -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 141474 | 0.68 | 0.690141 |
Target: 5'- -gGCCUCUUucCACCgGcCGagGCGGCCc -3' miRNA: 3'- ggCGGAGAA--GUGGgU-GCagCGCCGGc -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 30821 | 0.68 | 0.670784 |
Target: 5'- uCCGCCUCgugcUCgaacggGCUCGCGUCGUcGUCGg -3' miRNA: 3'- -GGCGGAGa---AG------UGGGUGCAGCGcCGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 46394 | 0.68 | 0.670784 |
Target: 5'- aCCGCCcCgaucgUCGCCCc---CGCGGCCa -3' miRNA: 3'- -GGCGGaGa----AGUGGGugcaGCGCCGGc -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 142 | 0.68 | 0.68048 |
Target: 5'- gCCGCCUUaaCGCCgGCGcgcaGCGcGCCGa -3' miRNA: 3'- -GGCGGAGaaGUGGgUGCag--CGC-CGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 133876 | 0.68 | 0.68048 |
Target: 5'- uCCGCgCUCagagucuuggcgUUCACCCACGgcucguaCGCGGUa- -3' miRNA: 3'- -GGCG-GAG------------AAGUGGGUGCa------GCGCCGgc -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 96302 | 0.68 | 0.68048 |
Target: 5'- aUCGCCga--CGCCCGCaaCGCGGUCGu -3' miRNA: 3'- -GGCGGagaaGUGGGUGcaGCGCCGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 137240 | 0.68 | 0.68048 |
Target: 5'- uUCGUCUCgcCGCUCuCGUCcgGCGGCCa -3' miRNA: 3'- -GGCGGAGaaGUGGGuGCAG--CGCCGGc -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 144776 | 0.68 | 0.68048 |
Target: 5'- aUGCC-CgcgCGCCCugGcUCGCGGCg- -3' miRNA: 3'- gGCGGaGaa-GUGGGugC-AGCGCCGgc -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 43179 | 0.68 | 0.699757 |
Target: 5'- -aGCCUCUaUCgcgcuGCCUGCGaCGCGGgCCGg -3' miRNA: 3'- ggCGGAGA-AG-----UGGGUGCaGCGCC-GGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 139519 | 0.68 | 0.68048 |
Target: 5'- aCGCCUCUUCcuggagcagcaGCaugggCACGaUCGCGGCUu -3' miRNA: 3'- gGCGGAGAAG-----------UGg----GUGC-AGCGCCGGc -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 162206 | 0.68 | 0.699757 |
Target: 5'- -aGCCUCUaUCgcgcuGCCUGCGaCGCGGgCCGg -3' miRNA: 3'- ggCGGAGA-AG-----UGGGUGCaGCGCC-GGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 97598 | 0.68 | 0.709321 |
Target: 5'- aCCGCUUCcUCGgCCGCG--GCGGCUa -3' miRNA: 3'- -GGCGGAGaAGUgGGUGCagCGCCGGc -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 131272 | 0.68 | 0.709321 |
Target: 5'- cCCaCCUCUggCGCcuCCACGUCGggaaUGGCCGu -3' miRNA: 3'- -GGcGGAGAa-GUG--GGUGCAGC----GCCGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 4059 | 0.68 | 0.670784 |
Target: 5'- uCCuCCUCUUCGUCUAUGUCGCagggaGGCCc -3' miRNA: 3'- -GGcGGAGAAGUGGGUGCAGCG-----CCGGc -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 51078 | 0.68 | 0.670784 |
Target: 5'- gCCGCCUag--ACCUGCuUCGCGGUCGc -3' miRNA: 3'- -GGCGGAgaagUGGGUGcAGCGCCGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 39646 | 0.68 | 0.709321 |
Target: 5'- uCCGCUUCccCACaCCGCGgCGUGGgCGg -3' miRNA: 3'- -GGCGGAGaaGUG-GGUGCaGCGCCgGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 33578 | 0.68 | 0.709321 |
Target: 5'- aCCGCgUCguucgggUCACCCGCGgCGCGuuUGg -3' miRNA: 3'- -GGCGgAGa------AGUGGGUGCaGCGCcgGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 12245 | 0.68 | 0.709321 |
Target: 5'- cCCaCCUCUggCGCcuCCACGUCGggaaUGGCCGu -3' miRNA: 3'- -GGcGGAGAa-GUG--GGUGCAGC----GCCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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