miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24703 3' -60 NC_005264.1 + 127077 1.09 0.001705
Target:  5'- uCCGCCUCUUCACCCACGUCGCGGCCGc -3'
miRNA:   3'- -GGCGGAGAAGUGGGUGCAGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 8050 1.09 0.001705
Target:  5'- uCCGCCUCUUCACCCACGUCGCGGCCGc -3'
miRNA:   3'- -GGCGGAGAAGUGGGUGCAGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 23732 0.75 0.298628
Target:  5'- gCUGCCgUgUUCGcCCCACGUCGCGGUg- -3'
miRNA:   3'- -GGCGG-AgAAGU-GGGUGCAGCGCCGgc -5'
24703 3' -60 NC_005264.1 + 19862 0.73 0.386036
Target:  5'- cCCGCCUCau-GCCCGagagacCGcCGCGGCCGc -3'
miRNA:   3'- -GGCGGAGaagUGGGU------GCaGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 82560 0.73 0.386036
Target:  5'- gCCGCCUCUUUAaucUCCGCugaGCGGCCu -3'
miRNA:   3'- -GGCGGAGAAGU---GGGUGcagCGCCGGc -5'
24703 3' -60 NC_005264.1 + 26305 0.73 0.402155
Target:  5'- cCCGCgUCUUCGUCCGCGUCGUcuccGGUCu -3'
miRNA:   3'- -GGCGgAGAAGUGGGUGCAGCG----CCGGc -5'
24703 3' -60 NC_005264.1 + 6236 0.73 0.418695
Target:  5'- gCCGCCgcgagaCUUgcCGCCUcCGUCGCGGUCGu -3'
miRNA:   3'- -GGCGGa-----GAA--GUGGGuGCAGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 34618 0.73 0.418695
Target:  5'- aCCGUUUgUUCaagGCCCGCGggguguUCGCGGCCa -3'
miRNA:   3'- -GGCGGAgAAG---UGGGUGC------AGCGCCGGc -5'
24703 3' -60 NC_005264.1 + 125263 0.73 0.418695
Target:  5'- gCCGCCgcgagaCUUgcCGCCUcCGUCGCGGUCGu -3'
miRNA:   3'- -GGCGGa-----GAA--GUGGGuGCAGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 84836 0.73 0.427119
Target:  5'- aUCGaCgUgaUCGCCCGCGaUCGCGGCCu -3'
miRNA:   3'- -GGC-GgAgaAGUGGGUGC-AGCGCCGGc -5'
24703 3' -60 NC_005264.1 + 49787 0.72 0.435642
Target:  5'- uCCGUCUCgcgUaagaucgccgcgGCCCA-GUCGCGGCCGc -3'
miRNA:   3'- -GGCGGAGaa-G------------UGGGUgCAGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 3525 0.72 0.452978
Target:  5'- uCCGCCUCgUCgaaCCGCGaCGCGGCgGc -3'
miRNA:   3'- -GGCGGAGaAGug-GGUGCaGCGCCGgC- -5'
24703 3' -60 NC_005264.1 + 122552 0.72 0.452978
Target:  5'- uCCGCCUCgUCgaaCCGCGaCGCGGCgGc -3'
miRNA:   3'- -GGCGGAGaAGug-GGUGCaGCGCCGgC- -5'
24703 3' -60 NC_005264.1 + 88584 0.72 0.461786
Target:  5'- cCCGCCUCUacCGCCguguCugGagCGCGGCCa -3'
miRNA:   3'- -GGCGGAGAa-GUGG----GugCa-GCGCCGGc -5'
24703 3' -60 NC_005264.1 + 133215 0.72 0.479667
Target:  5'- aCGaCCUCUUUACCC-CGUgCGCcGCCGc -3'
miRNA:   3'- gGC-GGAGAAGUGGGuGCA-GCGcCGGC- -5'
24703 3' -60 NC_005264.1 + 25545 0.71 0.488733
Target:  5'- gUGCCgua-CGCCCGCGUCGCcGCCa -3'
miRNA:   3'- gGCGGagaaGUGGGUGCAGCGcCGGc -5'
24703 3' -60 NC_005264.1 + 139073 0.71 0.516395
Target:  5'- gCCGguuCCUUgcugUCGCCUauuacgACGUCGCGGCUGc -3'
miRNA:   3'- -GGC---GGAGa---AGUGGG------UGCAGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 117682 0.71 0.516395
Target:  5'- gCCGCgCUCUcCugCCuccGCGUCGUGGCg- -3'
miRNA:   3'- -GGCG-GAGAaGugGG---UGCAGCGCCGgc -5'
24703 3' -60 NC_005264.1 + 20156 0.71 0.525757
Target:  5'- gCCGCCgg--CGCCCAagaUCGCGGCaCGa -3'
miRNA:   3'- -GGCGGagaaGUGGGUgc-AGCGCCG-GC- -5'
24703 3' -60 NC_005264.1 + 622 0.71 0.525757
Target:  5'- cCCGCCg----GCCCGCGUCGCaGGCa- -3'
miRNA:   3'- -GGCGGagaagUGGGUGCAGCG-CCGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.