miRNA display CGI


Results 41 - 60 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24703 3' -60 NC_005264.1 + 121882 0.69 0.631786
Target:  5'- gCGCCg--UCGCCCGC--UGCGGCUGc -3'
miRNA:   3'- gGCGGagaAGUGGGUGcaGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 151053 0.69 0.631786
Target:  5'- aCCGCCUCgggCugCCcCGgagUGCGaGCCa -3'
miRNA:   3'- -GGCGGAGaa-GugGGuGCa--GCGC-CGGc -5'
24703 3' -60 NC_005264.1 + 79138 0.69 0.635693
Target:  5'- gCCGCCgc--CACCgcauuucguguacuaCACG-CGCGGCCGg -3'
miRNA:   3'- -GGCGGagaaGUGG---------------GUGCaGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 67376 0.69 0.641552
Target:  5'- cCCGCgCUCgcugCGCCCGCcggCGCGGUa- -3'
miRNA:   3'- -GGCG-GAGaa--GUGGGUGca-GCGCCGgc -5'
24703 3' -60 NC_005264.1 + 38174 0.69 0.651313
Target:  5'- aCCGCCgcgCUguggggaCACCUAgCGUcgCGCGGCCc -3'
miRNA:   3'- -GGCGGa--GAa------GUGGGU-GCA--GCGCCGGc -5'
24703 3' -60 NC_005264.1 + 40144 0.69 0.651313
Target:  5'- gCCGCCgagaCggcCGCCCAuCGUCgagacgGCGGCCa -3'
miRNA:   3'- -GGCGGa---Gaa-GUGGGU-GCAG------CGCCGGc -5'
24703 3' -60 NC_005264.1 + 159171 0.69 0.651313
Target:  5'- gCCGCCgagaCggcCGCCCAuCGUCgagacgGCGGCCa -3'
miRNA:   3'- -GGCGGa---Gaa-GUGGGU-GCAG------CGCCGGc -5'
24703 3' -60 NC_005264.1 + 157201 0.69 0.651313
Target:  5'- aCCGCCgcgCUguggggaCACCUAgCGUcgCGCGGCCc -3'
miRNA:   3'- -GGCGGa--GAa------GUGGGU-GCA--GCGCCGGc -5'
24703 3' -60 NC_005264.1 + 66610 0.68 0.661059
Target:  5'- gCGCCgcgUUGCCgGCGccgUCGCGGCCc -3'
miRNA:   3'- gGCGGagaAGUGGgUGC---AGCGCCGGc -5'
24703 3' -60 NC_005264.1 + 4059 0.68 0.670784
Target:  5'- uCCuCCUCUUCGUCUAUGUCGCagggaGGCCc -3'
miRNA:   3'- -GGcGGAGAAGUGGGUGCAGCG-----CCGGc -5'
24703 3' -60 NC_005264.1 + 51078 0.68 0.670784
Target:  5'- gCCGCCUag--ACCUGCuUCGCGGUCGc -3'
miRNA:   3'- -GGCGGAgaagUGGGUGcAGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 149847 0.68 0.670784
Target:  5'- uCCGCCUCgugcUCgaacggGCUCGCGUCGUcGUCGg -3'
miRNA:   3'- -GGCGGAGa---AG------UGGGUGCAGCGcCGGC- -5'
24703 3' -60 NC_005264.1 + 46394 0.68 0.670784
Target:  5'- aCCGCCcCgaucgUCGCCCc---CGCGGCCa -3'
miRNA:   3'- -GGCGGaGa----AGUGGGugcaGCGCCGGc -5'
24703 3' -60 NC_005264.1 + 30821 0.68 0.670784
Target:  5'- uCCGCCUCgugcUCgaacggGCUCGCGUCGUcGUCGg -3'
miRNA:   3'- -GGCGGAGa---AG------UGGGUGCAGCGcCGGC- -5'
24703 3' -60 NC_005264.1 + 71826 0.68 0.670784
Target:  5'- gCCGCCcgCggggUCGCgaauaacgaCGCGUCGCGGCgGc -3'
miRNA:   3'- -GGCGGa-Ga---AGUGg--------GUGCAGCGCCGgC- -5'
24703 3' -60 NC_005264.1 + 142 0.68 0.68048
Target:  5'- gCCGCCUUaaCGCCgGCGcgcaGCGcGCCGa -3'
miRNA:   3'- -GGCGGAGaaGUGGgUGCag--CGC-CGGC- -5'
24703 3' -60 NC_005264.1 + 128021 0.68 0.68048
Target:  5'- -aGCCUCUgcagcaacaUCAUuagcgcuaCCGCGUCGaUGGCCGc -3'
miRNA:   3'- ggCGGAGA---------AGUG--------GGUGCAGC-GCCGGC- -5'
24703 3' -60 NC_005264.1 + 133876 0.68 0.68048
Target:  5'- uCCGCgCUCagagucuuggcgUUCACCCACGgcucguaCGCGGUa- -3'
miRNA:   3'- -GGCG-GAG------------AAGUGGGUGCa------GCGCCGgc -5'
24703 3' -60 NC_005264.1 + 96302 0.68 0.68048
Target:  5'- aUCGCCga--CGCCCGCaaCGCGGUCGu -3'
miRNA:   3'- -GGCGGagaaGUGGGUGcaGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 137240 0.68 0.68048
Target:  5'- uUCGUCUCgcCGCUCuCGUCcgGCGGCCa -3'
miRNA:   3'- -GGCGGAGaaGUGGGuGCAG--CGCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.