miRNA display CGI


Results 61 - 80 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24703 3' -60 NC_005264.1 + 60979 0.68 0.68048
Target:  5'- uUGUCUCggCGCCgACuaUCGCGGCCu -3'
miRNA:   3'- gGCGGAGaaGUGGgUGc-AGCGCCGGc -5'
24703 3' -60 NC_005264.1 + 96302 0.68 0.68048
Target:  5'- aUCGCCga--CGCCCGCaaCGCGGUCGu -3'
miRNA:   3'- -GGCGGagaaGUGGGUGcaGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 133876 0.68 0.68048
Target:  5'- uCCGCgCUCagagucuuggcgUUCACCCACGgcucguaCGCGGUa- -3'
miRNA:   3'- -GGCG-GAG------------AAGUGGGUGCa------GCGCCGgc -5'
24703 3' -60 NC_005264.1 + 128021 0.68 0.68048
Target:  5'- -aGCCUCUgcagcaacaUCAUuagcgcuaCCGCGUCGaUGGCCGc -3'
miRNA:   3'- ggCGGAGA---------AGUG--------GGUGCAGC-GCCGGC- -5'
24703 3' -60 NC_005264.1 + 144776 0.68 0.68048
Target:  5'- aUGCC-CgcgCGCCCugGcUCGCGGCg- -3'
miRNA:   3'- gGCGGaGaa-GUGGGugC-AGCGCCGgc -5'
24703 3' -60 NC_005264.1 + 139519 0.68 0.68048
Target:  5'- aCGCCUCUUCcuggagcagcaGCaugggCACGaUCGCGGCUu -3'
miRNA:   3'- gGCGGAGAAG-----------UGg----GUGC-AGCGCCGGc -5'
24703 3' -60 NC_005264.1 + 142 0.68 0.68048
Target:  5'- gCCGCCUUaaCGCCgGCGcgcaGCGcGCCGa -3'
miRNA:   3'- -GGCGGAGaaGUGGgUGCag--CGC-CGGC- -5'
24703 3' -60 NC_005264.1 + 141474 0.68 0.690141
Target:  5'- -gGCCUCUUucCACCgGcCGagGCGGCCc -3'
miRNA:   3'- ggCGGAGAA--GUGGgU-GCagCGCCGGc -5'
24703 3' -60 NC_005264.1 + 68044 0.68 0.690141
Target:  5'- aCCGCUUCcgUGCCCgACGagGCGGCg- -3'
miRNA:   3'- -GGCGGAGaaGUGGG-UGCagCGCCGgc -5'
24703 3' -60 NC_005264.1 + 69072 0.68 0.690141
Target:  5'- aCGCCUU-UCGCCagauGCGaucUCGCGGUCGu -3'
miRNA:   3'- gGCGGAGaAGUGGg---UGC---AGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 162206 0.68 0.699757
Target:  5'- -aGCCUCUaUCgcgcuGCCUGCGaCGCGGgCCGg -3'
miRNA:   3'- ggCGGAGA-AG-----UGGGUGCaGCGCC-GGC- -5'
24703 3' -60 NC_005264.1 + 43179 0.68 0.699757
Target:  5'- -aGCCUCUaUCgcgcuGCCUGCGaCGCGGgCCGg -3'
miRNA:   3'- ggCGGAGA-AG-----UGGGUGCaGCGCC-GGC- -5'
24703 3' -60 NC_005264.1 + 114132 0.68 0.699757
Target:  5'- gCCGCCUCaUCuCCCGCGa-GCGaCCGc -3'
miRNA:   3'- -GGCGGAGaAGuGGGUGCagCGCcGGC- -5'
24703 3' -60 NC_005264.1 + 118910 0.68 0.699757
Target:  5'- aCCGCgUaCUUgGCCCucgACGUCGaggcgaCGGCCGc -3'
miRNA:   3'- -GGCGgA-GAAgUGGG---UGCAGC------GCCGGC- -5'
24703 3' -60 NC_005264.1 + 118984 0.68 0.699757
Target:  5'- uCCGUCUCUUC-CCCGCG--GCaGCCc -3'
miRNA:   3'- -GGCGGAGAAGuGGGUGCagCGcCGGc -5'
24703 3' -60 NC_005264.1 + 12245 0.68 0.709321
Target:  5'- cCCaCCUCUggCGCcuCCACGUCGggaaUGGCCGu -3'
miRNA:   3'- -GGcGGAGAa-GUG--GGUGCAGC----GCCGGC- -5'
24703 3' -60 NC_005264.1 + 33578 0.68 0.709321
Target:  5'- aCCGCgUCguucgggUCACCCGCGgCGCGuuUGg -3'
miRNA:   3'- -GGCGgAGa------AGUGGGUGCaGCGCcgGC- -5'
24703 3' -60 NC_005264.1 + 39646 0.68 0.709321
Target:  5'- uCCGCUUCccCACaCCGCGgCGUGGgCGg -3'
miRNA:   3'- -GGCGGAGaaGUG-GGUGCaGCGCCgGC- -5'
24703 3' -60 NC_005264.1 + 97598 0.68 0.709321
Target:  5'- aCCGCUUCcUCGgCCGCG--GCGGCUa -3'
miRNA:   3'- -GGCGGAGaAGUgGGUGCagCGCCGGc -5'
24703 3' -60 NC_005264.1 + 131272 0.68 0.709321
Target:  5'- cCCaCCUCUggCGCcuCCACGUCGggaaUGGCCGu -3'
miRNA:   3'- -GGcGGAGAa-GUG--GGUGCAGC----GCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.