Results 81 - 100 of 149 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24703 | 3' | -60 | NC_005264.1 | + | 131272 | 0.68 | 0.709321 |
Target: 5'- cCCaCCUCUggCGCcuCCACGUCGggaaUGGCCGu -3' miRNA: 3'- -GGcGGAGAa-GUG--GGUGCAGC----GCCGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 24651 | 0.68 | 0.709321 |
Target: 5'- gCCGCCUUgucUCugCaGCGagGCaGGCCGg -3' miRNA: 3'- -GGCGGAGa--AGugGgUGCagCG-CCGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 72003 | 0.67 | 0.718826 |
Target: 5'- gCUGUUUCUU-GCUCgACGUgCGCGGCCGc -3' miRNA: 3'- -GGCGGAGAAgUGGG-UGCA-GCGCCGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 15259 | 0.67 | 0.726382 |
Target: 5'- gCGCCUgCgaccguuccccgUCGCaCACGUCgGCGGCCa -3' miRNA: 3'- gGCGGA-Ga-----------AGUGgGUGCAG-CGCCGGc -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 70934 | 0.67 | 0.728263 |
Target: 5'- gUCGCCg---CGCCCGCccaucgcuGcCGCGGCCa -3' miRNA: 3'- -GGCGGagaaGUGGGUG--------CaGCGCCGGc -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 58693 | 0.67 | 0.737625 |
Target: 5'- cCCgGCCUCUaugaCGgCCGCGUUuacuaggcggGCGGCCa -3' miRNA: 3'- -GG-CGGAGAa---GUgGGUGCAG----------CGCCGGc -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 82844 | 0.67 | 0.737625 |
Target: 5'- gCGCCUCcUCuuCCg---CGCGGCCGg -3' miRNA: 3'- gGCGGAGaAGugGGugcaGCGCCGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 138659 | 0.67 | 0.737625 |
Target: 5'- gCGCCagaCUUUACCgAC--CGCGGCCGc -3' miRNA: 3'- gGCGGa--GAAGUGGgUGcaGCGCCGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 87119 | 0.67 | 0.744128 |
Target: 5'- -gGCCUCcggCGCCCGCGgggcgcaccagucuUCGC-GCCGa -3' miRNA: 3'- ggCGGAGaa-GUGGGUGC--------------AGCGcCGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 62825 | 0.67 | 0.745054 |
Target: 5'- gCCGCCgcggccuUCUUUAuuUCCGCGUCGCGuuucgucGCCu -3' miRNA: 3'- -GGCGG-------AGAAGU--GGGUGCAGCGC-------CGGc -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 77932 | 0.67 | 0.746903 |
Target: 5'- cCUGgCUCUUCccGCCCuccCGUCcugcGCGGCCc -3' miRNA: 3'- -GGCgGAGAAG--UGGGu--GCAG----CGCCGGc -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 446 | 0.67 | 0.746903 |
Target: 5'- gCGUCUCg-UACCUAUG-CGCGGUCGu -3' miRNA: 3'- gGCGGAGaaGUGGGUGCaGCGCCGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 43670 | 0.67 | 0.746903 |
Target: 5'- gCGCUgcg-CGCCgGCGUUaagGCGGCCGc -3' miRNA: 3'- gGCGGagaaGUGGgUGCAG---CGCCGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 20236 | 0.67 | 0.746903 |
Target: 5'- -aGCC-CggcgUGgCCAuCGUCGCGGCCGg -3' miRNA: 3'- ggCGGaGaa--GUgGGU-GCAGCGCCGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 37166 | 0.67 | 0.746903 |
Target: 5'- uCUGCCggagCUUCcggacauguGCCCcCG-CGUGGCCGu -3' miRNA: 3'- -GGCGGa---GAAG---------UGGGuGCaGCGCCGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 156193 | 0.67 | 0.746903 |
Target: 5'- uCUGCCggagCUUCcggacauguGCCCcCG-CGUGGCCGu -3' miRNA: 3'- -GGCGGa---GAAG---------UGGGuGCaGCGCCGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 119473 | 0.67 | 0.746903 |
Target: 5'- gCGUCUCg-UACCUAUG-CGCGGUCGu -3' miRNA: 3'- gGCGGAGaaGUGGGUGCaGCGCCGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 162696 | 0.67 | 0.746903 |
Target: 5'- gCGCUgcg-CGCCgGCGUUaagGCGGCCGc -3' miRNA: 3'- gGCGGagaaGUGGgUGCAG---CGCCGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 35813 | 0.67 | 0.756089 |
Target: 5'- gCGCCUCUgccggC-CCCGCaaUgGCGGCCc -3' miRNA: 3'- gGCGGAGAa----GuGGGUGc-AgCGCCGGc -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 7529 | 0.67 | 0.756089 |
Target: 5'- uCCGcCCUCUccUCGCCUACGcaCGaggaCGGCCu -3' miRNA: 3'- -GGC-GGAGA--AGUGGGUGCa-GC----GCCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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