Results 21 - 40 of 149 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24703 | 3' | -60 | NC_005264.1 | + | 15070 | 0.66 | 0.800367 |
Target: 5'- gCgGCCgaucgCACCUAUGUCGCGcGCUu -3' miRNA: 3'- -GgCGGagaa-GUGGGUGCAGCGC-CGGc -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 41975 | 0.66 | 0.799512 |
Target: 5'- uCCGCCcugucuaguaguuUCUUCACCUugucuuCGugcUCGuCGGCCa -3' miRNA: 3'- -GGCGG-------------AGAAGUGGGu-----GC---AGC-GCCGGc -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 118808 | 0.66 | 0.799512 |
Target: 5'- gCgGCCUCUaCGCCCAacggcuggacgcaUGagGCGGCUa -3' miRNA: 3'- -GgCGGAGAaGUGGGU-------------GCagCGCCGGc -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 90337 | 0.66 | 0.791758 |
Target: 5'- gCGCCUCUcggcgcagaucuUCaACCCGcCGaCGCuGCCGg -3' miRNA: 3'- gGCGGAGA------------AG-UGGGU-GCaGCGcCGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 157783 | 0.66 | 0.790889 |
Target: 5'- uCgGCgUCUUCccagcuaggcggcGCCCACGacgcggaaccUCGUGGCCu -3' miRNA: 3'- -GgCGgAGAAG-------------UGGGUGC----------AGCGCCGGc -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 158673 | 0.66 | 0.783018 |
Target: 5'- uCCGCUUCc-CACaCCGCGgCGUGGgCGg -3' miRNA: 3'- -GGCGGAGaaGUG-GGUGCaGCGCCgGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 38537 | 0.66 | 0.783018 |
Target: 5'- gCCGCCg---C-CCCGcCGUC-CGGCCGc -3' miRNA: 3'- -GGCGGagaaGuGGGU-GCAGcGCCGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 65829 | 0.66 | 0.783018 |
Target: 5'- gCCGCCUCUUCguGCUC-CGUagcuuuaguaaaCGCGuGUCGa -3' miRNA: 3'- -GGCGGAGAAG--UGGGuGCA------------GCGC-CGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 68420 | 0.66 | 0.783018 |
Target: 5'- gCUGCucgCUCUggacUACCgGCGcCGCGGCCu -3' miRNA: 3'- -GGCG---GAGAa---GUGGgUGCaGCGCCGGc -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 157564 | 0.66 | 0.783018 |
Target: 5'- gCCGCCg---C-CCCGcCGUC-CGGCCGc -3' miRNA: 3'- -GGCGGagaaGuGGGU-GCAGcGCCGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 104579 | 0.66 | 0.774154 |
Target: 5'- gCGCCaugcCGCCCACGggaUCG-GGCCGa -3' miRNA: 3'- gGCGGagaaGUGGGUGC---AGCgCCGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 149225 | 0.66 | 0.774154 |
Target: 5'- gCCGCCcCU--GCCCGCGUcccgacCGCGaucGCCGg -3' miRNA: 3'- -GGCGGaGAagUGGGUGCA------GCGC---CGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 70261 | 0.66 | 0.774154 |
Target: 5'- cCCGCgUCggCGuaaaaCCugGUCuGCGGCUGa -3' miRNA: 3'- -GGCGgAGaaGUg----GGugCAG-CGCCGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 30198 | 0.66 | 0.774154 |
Target: 5'- gCCGCCcCU--GCCCGCGUcccgacCGCGaucGCCGg -3' miRNA: 3'- -GGCGGaGAagUGGGUGCA------GCGC---CGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 123170 | 0.66 | 0.774154 |
Target: 5'- gCCGCUUgucgcgaugCUUgcCGCCCACGcCGCGGUg- -3' miRNA: 3'- -GGCGGA---------GAA--GUGGGUGCaGCGCCGgc -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 67435 | 0.66 | 0.774154 |
Target: 5'- cCCGCCuaUCUgaaGCCCcuGCaccagCGCGGCCa -3' miRNA: 3'- -GGCGG--AGAag-UGGG--UGca---GCGCCGGc -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 4143 | 0.66 | 0.774154 |
Target: 5'- gCCGCUUgucgcgaugCUUgcCGCCCACGcCGCGGUg- -3' miRNA: 3'- -GGCGGA---------GAA--GUGGGUGCaGCGCCGgc -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 62741 | 0.66 | 0.774154 |
Target: 5'- aCCGCgUCgUCGCUgaGCccCGCGGCCGc -3' miRNA: 3'- -GGCGgAGaAGUGGg-UGcaGCGCCGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 151443 | 0.66 | 0.772368 |
Target: 5'- -aGCUUCaauaucacuaaCAUCCGCGaCGCGGCCGc -3' miRNA: 3'- ggCGGAGaa---------GUGGGUGCaGCGCCGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 33914 | 0.67 | 0.768781 |
Target: 5'- gCCGCCUU-UCugCCGCcaggcugggaaggccGUgGCGcGCCGg -3' miRNA: 3'- -GGCGGAGaAGugGGUG---------------CAgCGC-CGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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