miRNA display CGI


Results 41 - 60 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24703 3' -60 NC_005264.1 + 5239 0.67 0.757002
Target:  5'- gCgGCCUCggguacguuuagagCGCCgGgaggcgaGUCGCGGCCGg -3'
miRNA:   3'- -GgCGGAGaa------------GUGGgUg------CAGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 124266 0.67 0.757002
Target:  5'- gCgGCCUCggguacguuuagagCGCCgGgaggcgaGUCGCGGCCGg -3'
miRNA:   3'- -GgCGGAGaa------------GUGGgUg------CAGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 149416 0.67 0.756089
Target:  5'- gCGUCUCggCGgCgGCgGUCGCGcGCCGg -3'
miRNA:   3'- gGCGGAGaaGUgGgUG-CAGCGC-CGGC- -5'
24703 3' -60 NC_005264.1 + 117499 0.67 0.756089
Target:  5'- uUCGCCUCgucucgggCGCggCGCGUCuGCGGUCGc -3'
miRNA:   3'- -GGCGGAGaa------GUGg-GUGCAG-CGCCGGC- -5'
24703 3' -60 NC_005264.1 + 154839 0.67 0.756089
Target:  5'- gCGCCUCUgccggC-CCCGCaaUgGCGGCCc -3'
miRNA:   3'- gGCGGAGAa----GuGGGUGc-AgCGCCGGc -5'
24703 3' -60 NC_005264.1 + 126556 0.67 0.756089
Target:  5'- uCCGcCCUCUccUCGCCUACGcaCGaggaCGGCCu -3'
miRNA:   3'- -GGC-GGAGA--AGUGGGUGCa-GC----GCCGGc -5'
24703 3' -60 NC_005264.1 + 7529 0.67 0.756089
Target:  5'- uCCGcCCUCUccUCGCCUACGcaCGaggaCGGCCu -3'
miRNA:   3'- -GGC-GGAGA--AGUGGGUGCa-GC----GCCGGc -5'
24703 3' -60 NC_005264.1 + 21942 0.67 0.756089
Target:  5'- gCCGCUUCgauggUCgauGCCCGagagugGUCGCGGCa- -3'
miRNA:   3'- -GGCGGAGa----AG---UGGGUg-----CAGCGCCGgc -5'
24703 3' -60 NC_005264.1 + 30389 0.67 0.756089
Target:  5'- gCGUCUCggCGgCgGCgGUCGCGcGCCGg -3'
miRNA:   3'- gGCGGAGaaGUgGgUG-CAGCGC-CGGC- -5'
24703 3' -60 NC_005264.1 + 98426 0.67 0.756089
Target:  5'- aUCGCCg---UGCCCGCGgCGuCGGCCu -3'
miRNA:   3'- -GGCGGagaaGUGGGUGCaGC-GCCGGc -5'
24703 3' -60 NC_005264.1 + 35813 0.67 0.756089
Target:  5'- gCGCCUCUgccggC-CCCGCaaUgGCGGCCc -3'
miRNA:   3'- gGCGGAGAa----GuGGGUGc-AgCGCCGGc -5'
24703 3' -60 NC_005264.1 + 37166 0.67 0.746903
Target:  5'- uCUGCCggagCUUCcggacauguGCCCcCG-CGUGGCCGu -3'
miRNA:   3'- -GGCGGa---GAAG---------UGGGuGCaGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 119473 0.67 0.746903
Target:  5'- gCGUCUCg-UACCUAUG-CGCGGUCGu -3'
miRNA:   3'- gGCGGAGaaGUGGGUGCaGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 20236 0.67 0.746903
Target:  5'- -aGCC-CggcgUGgCCAuCGUCGCGGCCGg -3'
miRNA:   3'- ggCGGaGaa--GUgGGU-GCAGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 446 0.67 0.746903
Target:  5'- gCGUCUCg-UACCUAUG-CGCGGUCGu -3'
miRNA:   3'- gGCGGAGaaGUGGGUGCaGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 77932 0.67 0.746903
Target:  5'- cCUGgCUCUUCccGCCCuccCGUCcugcGCGGCCc -3'
miRNA:   3'- -GGCgGAGAAG--UGGGu--GCAG----CGCCGGc -5'
24703 3' -60 NC_005264.1 + 43670 0.67 0.746903
Target:  5'- gCGCUgcg-CGCCgGCGUUaagGCGGCCGc -3'
miRNA:   3'- gGCGGagaaGUGGgUGCAG---CGCCGGC- -5'
24703 3' -60 NC_005264.1 + 156193 0.67 0.746903
Target:  5'- uCUGCCggagCUUCcggacauguGCCCcCG-CGUGGCCGu -3'
miRNA:   3'- -GGCGGa---GAAG---------UGGGuGCaGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 162696 0.67 0.746903
Target:  5'- gCGCUgcg-CGCCgGCGUUaagGCGGCCGc -3'
miRNA:   3'- gGCGGagaaGUGGgUGCAG---CGCCGGC- -5'
24703 3' -60 NC_005264.1 + 62825 0.67 0.745054
Target:  5'- gCCGCCgcggccuUCUUUAuuUCCGCGUCGCGuuucgucGCCu -3'
miRNA:   3'- -GGCGG-------AGAAGU--GGGUGCAGCGC-------CGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.