miRNA display CGI


Results 121 - 140 of 149 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24703 3' -60 NC_005264.1 + 128525 0.7 0.590845
Target:  5'- gCCGCCUCgaaggcgcuauagUUCcugugACCCACGUauauuucCGCGGCgGa -3'
miRNA:   3'- -GGCGGAG-------------AAG-----UGGGUGCA-------GCGCCGgC- -5'
24703 3' -60 NC_005264.1 + 68240 0.7 0.57342
Target:  5'- aCCGCCaagCcaUGCCCGCGcCGCGGgCGg -3'
miRNA:   3'- -GGCGGa--GaaGUGGGUGCaGCGCCgGC- -5'
24703 3' -60 NC_005264.1 + 146168 0.7 0.56379
Target:  5'- aUGCCUCg-CAUgCACGUCGCguGGCCu -3'
miRNA:   3'- gGCGGAGaaGUGgGUGCAGCG--CCGGc -5'
24703 3' -60 NC_005264.1 + 134782 0.7 0.554204
Target:  5'- uUCGCUUCcgcgcgcuUUUACCCgGCGUCGCGcgcGCCGg -3'
miRNA:   3'- -GGCGGAG--------AAGUGGG-UGCAGCGC---CGGC- -5'
24703 3' -60 NC_005264.1 + 88507 0.7 0.554204
Target:  5'- aUCGCCUCUgagaUCACCgACGacgacUCGuUGGCCa -3'
miRNA:   3'- -GGCGGAGA----AGUGGgUGC-----AGC-GCCGGc -5'
24703 3' -60 NC_005264.1 + 78628 0.7 0.544666
Target:  5'- gCGCCUCUUCugUUAacCGcCGCGGCgGc -3'
miRNA:   3'- gGCGGAGAAGugGGU--GCaGCGCCGgC- -5'
24703 3' -60 NC_005264.1 + 62283 0.7 0.544666
Target:  5'- gCGCC-CUUguCCCGCGaUCuCGGCCGu -3'
miRNA:   3'- gGCGGaGAAguGGGUGC-AGcGCCGGC- -5'
24703 3' -60 NC_005264.1 + 88014 0.71 0.535182
Target:  5'- cCUGCCcCUggUGCCCACGuuccUCGgGGCCGa -3'
miRNA:   3'- -GGCGGaGAa-GUGGGUGC----AGCgCCGGC- -5'
24703 3' -60 NC_005264.1 + 20156 0.71 0.525757
Target:  5'- gCCGCCgg--CGCCCAagaUCGCGGCaCGa -3'
miRNA:   3'- -GGCGGagaaGUGGGUgc-AGCGCCG-GC- -5'
24703 3' -60 NC_005264.1 + 622 0.71 0.525757
Target:  5'- cCCGCCg----GCCCGCGUCGCaGGCa- -3'
miRNA:   3'- -GGCGGagaagUGGGUGCAGCG-CCGgc -5'
24703 3' -60 NC_005264.1 + 119649 0.71 0.525757
Target:  5'- cCCGCCg----GCCCGCGUCGCaGGCa- -3'
miRNA:   3'- -GGCGGagaagUGGGUGCAGCG-CCGgc -5'
24703 3' -60 NC_005264.1 + 139073 0.71 0.516395
Target:  5'- gCCGguuCCUUgcugUCGCCUauuacgACGUCGCGGCUGc -3'
miRNA:   3'- -GGC---GGAGa---AGUGGG------UGCAGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 117682 0.71 0.516395
Target:  5'- gCCGCgCUCUcCugCCuccGCGUCGUGGCg- -3'
miRNA:   3'- -GGCG-GAGAaGugGG---UGCAGCGCCGgc -5'
24703 3' -60 NC_005264.1 + 25545 0.71 0.488733
Target:  5'- gUGCCgua-CGCCCGCGUCGCcGCCa -3'
miRNA:   3'- gGCGGagaaGUGGGUGCAGCGcCGGc -5'
24703 3' -60 NC_005264.1 + 133215 0.72 0.479667
Target:  5'- aCGaCCUCUUUACCC-CGUgCGCcGCCGc -3'
miRNA:   3'- gGC-GGAGAAGUGGGuGCA-GCGcCGGC- -5'
24703 3' -60 NC_005264.1 + 88584 0.72 0.461786
Target:  5'- cCCGCCUCUacCGCCguguCugGagCGCGGCCa -3'
miRNA:   3'- -GGCGGAGAa-GUGG----GugCa-GCGCCGGc -5'
24703 3' -60 NC_005264.1 + 122552 0.72 0.452978
Target:  5'- uCCGCCUCgUCgaaCCGCGaCGCGGCgGc -3'
miRNA:   3'- -GGCGGAGaAGug-GGUGCaGCGCCGgC- -5'
24703 3' -60 NC_005264.1 + 3525 0.72 0.452978
Target:  5'- uCCGCCUCgUCgaaCCGCGaCGCGGCgGc -3'
miRNA:   3'- -GGCGGAGaAGug-GGUGCaGCGCCGgC- -5'
24703 3' -60 NC_005264.1 + 49787 0.72 0.435642
Target:  5'- uCCGUCUCgcgUaagaucgccgcgGCCCA-GUCGCGGCCGc -3'
miRNA:   3'- -GGCGGAGaa-G------------UGGGUgCAGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 84836 0.73 0.427119
Target:  5'- aUCGaCgUgaUCGCCCGCGaUCGCGGCCu -3'
miRNA:   3'- -GGC-GgAgaAGUGGGUGC-AGCGCCGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.