miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24703 3' -60 NC_005264.1 + 142 0.68 0.68048
Target:  5'- gCCGCCUUaaCGCCgGCGcgcaGCGcGCCGa -3'
miRNA:   3'- -GGCGGAGaaGUGGgUGCag--CGC-CGGC- -5'
24703 3' -60 NC_005264.1 + 446 0.67 0.746903
Target:  5'- gCGUCUCg-UACCUAUG-CGCGGUCGu -3'
miRNA:   3'- gGCGGAGaaGUGGGUGCaGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 622 0.71 0.525757
Target:  5'- cCCGCCg----GCCCGCGUCGCaGGCa- -3'
miRNA:   3'- -GGCGGagaagUGGGUGCAGCG-CCGgc -5'
24703 3' -60 NC_005264.1 + 2856 0.69 0.631786
Target:  5'- gCGCCg--UCGCCCGC--UGCGGCUGc -3'
miRNA:   3'- gGCGGagaAGUGGGUGcaGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 3525 0.72 0.452978
Target:  5'- uCCGCCUCgUCgaaCCGCGaCGCGGCgGc -3'
miRNA:   3'- -GGCGGAGaAGug-GGUGCaGCGCCGgC- -5'
24703 3' -60 NC_005264.1 + 4005 0.68 0.68048
Target:  5'- aUGCCUCcUCGCCCACcaggggcuUgGCgGGCCGa -3'
miRNA:   3'- gGCGGAGaAGUGGGUGc-------AgCG-CCGGC- -5'
24703 3' -60 NC_005264.1 + 4059 0.68 0.670784
Target:  5'- uCCuCCUCUUCGUCUAUGUCGCagggaGGCCc -3'
miRNA:   3'- -GGcGGAGAAGUGGGUGCAGCG-----CCGGc -5'
24703 3' -60 NC_005264.1 + 4143 0.66 0.774154
Target:  5'- gCCGCUUgucgcgaugCUUgcCGCCCACGcCGCGGUg- -3'
miRNA:   3'- -GGCGGA---------GAA--GUGGGUGCaGCGCCGgc -5'
24703 3' -60 NC_005264.1 + 4421 0.69 0.622019
Target:  5'- gUGCCccCUUCGCCgACGUCGUcaucgucugaGGCCu -3'
miRNA:   3'- gGCGGa-GAAGUGGgUGCAGCG----------CCGGc -5'
24703 3' -60 NC_005264.1 + 5239 0.67 0.757002
Target:  5'- gCgGCCUCggguacguuuagagCGCCgGgaggcgaGUCGCGGCCGg -3'
miRNA:   3'- -GgCGGAGaa------------GUGGgUg------CAGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 6236 0.73 0.418695
Target:  5'- gCCGCCgcgagaCUUgcCGCCUcCGUCGCGGUCGu -3'
miRNA:   3'- -GGCGGa-----GAA--GUGGGuGCAGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 7529 0.67 0.756089
Target:  5'- uCCGcCCUCUccUCGCCUACGcaCGaggaCGGCCu -3'
miRNA:   3'- -GGC-GGAGA--AGUGGGUGCa-GC----GCCGGc -5'
24703 3' -60 NC_005264.1 + 8050 1.09 0.001705
Target:  5'- uCCGCCUCUUCACCCACGUCGCGGCCGc -3'
miRNA:   3'- -GGCGGAGAAGUGGGUGCAGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 8758 0.69 0.621043
Target:  5'- gCGCCUCUUCcauaugaGCCUcuACGgcggCGCGGuuGu -3'
miRNA:   3'- gGCGGAGAAG-------UGGG--UGCa---GCGCCggC- -5'
24703 3' -60 NC_005264.1 + 8807 0.66 0.817161
Target:  5'- gCGCucCUCUUCgaGCgCCGC-UCGCGGCaCGg -3'
miRNA:   3'- gGCG--GAGAAG--UG-GGUGcAGCGCCG-GC- -5'
24703 3' -60 NC_005264.1 + 12245 0.68 0.709321
Target:  5'- cCCaCCUCUggCGCcuCCACGUCGggaaUGGCCGu -3'
miRNA:   3'- -GGcGGAGAa-GUG--GGUGCAGC----GCCGGC- -5'
24703 3' -60 NC_005264.1 + 15070 0.66 0.800367
Target:  5'- gCgGCCgaucgCACCUAUGUCGCGcGCUu -3'
miRNA:   3'- -GgCGGagaa-GUGGGUGCAGCGC-CGGc -5'
24703 3' -60 NC_005264.1 + 15259 0.67 0.726382
Target:  5'- gCGCCUgCgaccguuccccgUCGCaCACGUCgGCGGCCa -3'
miRNA:   3'- gGCGGA-Ga-----------AGUGgGUGCAG-CGCCGGc -5'
24703 3' -60 NC_005264.1 + 19862 0.73 0.386036
Target:  5'- cCCGCCUCau-GCCCGagagacCGcCGCGGCCGc -3'
miRNA:   3'- -GGCGGAGaagUGGGU------GCaGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 20156 0.71 0.525757
Target:  5'- gCCGCCgg--CGCCCAagaUCGCGGCaCGa -3'
miRNA:   3'- -GGCGGagaaGUGGGUgc-AGCGCCG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.