miRNA display CGI


Results 41 - 60 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24703 3' -60 NC_005264.1 + 38537 0.66 0.783018
Target:  5'- gCCGCCg---C-CCCGcCGUC-CGGCCGc -3'
miRNA:   3'- -GGCGGagaaGuGGGU-GCAGcGCCGGC- -5'
24703 3' -60 NC_005264.1 + 38738 0.66 0.817161
Target:  5'- cUCGCCga-UCGCCCguaACGUgGCGaGCCc -3'
miRNA:   3'- -GGCGGagaAGUGGG---UGCAgCGC-CGGc -5'
24703 3' -60 NC_005264.1 + 39646 0.68 0.709321
Target:  5'- uCCGCUUCccCACaCCGCGgCGUGGgCGg -3'
miRNA:   3'- -GGCGGAGaaGUG-GGUGCaGCGCCgGC- -5'
24703 3' -60 NC_005264.1 + 40144 0.69 0.651313
Target:  5'- gCCGCCgagaCggcCGCCCAuCGUCgagacgGCGGCCa -3'
miRNA:   3'- -GGCGGa---Gaa-GUGGGU-GCAG------CGCCGGc -5'
24703 3' -60 NC_005264.1 + 40933 0.66 0.800367
Target:  5'- cCCGCCgcgCcgCGCCCcgguCGaUCGCaGCCGc -3'
miRNA:   3'- -GGCGGa--GaaGUGGGu---GC-AGCGcCGGC- -5'
24703 3' -60 NC_005264.1 + 41975 0.66 0.799512
Target:  5'- uCCGCCcugucuaguaguuUCUUCACCUugucuuCGugcUCGuCGGCCa -3'
miRNA:   3'- -GGCGG-------------AGAAGUGGGu-----GC---AGC-GCCGGc -5'
24703 3' -60 NC_005264.1 + 43179 0.68 0.699757
Target:  5'- -aGCCUCUaUCgcgcuGCCUGCGaCGCGGgCCGg -3'
miRNA:   3'- ggCGGAGA-AG-----UGGGUGCaGCGCC-GGC- -5'
24703 3' -60 NC_005264.1 + 43670 0.67 0.746903
Target:  5'- gCGCUgcg-CGCCgGCGUUaagGCGGCCGc -3'
miRNA:   3'- gGCGGagaaGUGGgUGCAG---CGCCGGC- -5'
24703 3' -60 NC_005264.1 + 46394 0.68 0.670784
Target:  5'- aCCGCCcCgaucgUCGCCCc---CGCGGCCa -3'
miRNA:   3'- -GGCGGaGa----AGUGGGugcaGCGCCGGc -5'
24703 3' -60 NC_005264.1 + 47002 0.69 0.631786
Target:  5'- cCUGCUUCUgaacagaCACCuCACGguggaaCGCGGCCu -3'
miRNA:   3'- -GGCGGAGAa------GUGG-GUGCa-----GCGCCGGc -5'
24703 3' -60 NC_005264.1 + 48696 0.66 0.817161
Target:  5'- uCUGCUcgUCgcggUCGCUCGCGggagaugagGCGGCCGg -3'
miRNA:   3'- -GGCGG--AGa---AGUGGGUGCag-------CGCCGGC- -5'
24703 3' -60 NC_005264.1 + 49787 0.72 0.435642
Target:  5'- uCCGUCUCgcgUaagaucgccgcgGCCCA-GUCGCGGCCGc -3'
miRNA:   3'- -GGCGGAGaa-G------------UGGGUgCAGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 51078 0.68 0.670784
Target:  5'- gCCGCCUag--ACCUGCuUCGCGGUCGc -3'
miRNA:   3'- -GGCGGAgaagUGGGUGcAGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 58693 0.67 0.737625
Target:  5'- cCCgGCCUCUaugaCGgCCGCGUUuacuaggcggGCGGCCa -3'
miRNA:   3'- -GG-CGGAGAa---GUgGGUGCAG----------CGCCGGc -5'
24703 3' -60 NC_005264.1 + 59088 0.66 0.808837
Target:  5'- cCCGCCUCagcaugaACCUaaGCaUgGCGGCCGc -3'
miRNA:   3'- -GGCGGAGaag----UGGG--UGcAgCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 60979 0.68 0.68048
Target:  5'- uUGUCUCggCGCCgACuaUCGCGGCCu -3'
miRNA:   3'- gGCGGAGaaGUGGgUGc-AGCGCCGGc -5'
24703 3' -60 NC_005264.1 + 62283 0.7 0.544666
Target:  5'- gCGCC-CUUguCCCGCGaUCuCGGCCGu -3'
miRNA:   3'- gGCGGaGAAguGGGUGC-AGcGCCGGC- -5'
24703 3' -60 NC_005264.1 + 62741 0.66 0.774154
Target:  5'- aCCGCgUCgUCGCUgaGCccCGCGGCCGc -3'
miRNA:   3'- -GGCGgAGaAGUGGg-UGcaGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 62825 0.67 0.745054
Target:  5'- gCCGCCgcggccuUCUUUAuuUCCGCGUCGCGuuucgucGCCu -3'
miRNA:   3'- -GGCGG-------AGAAGU--GGGUGCAGCGC-------CGGc -5'
24703 3' -60 NC_005264.1 + 65829 0.66 0.783018
Target:  5'- gCCGCCUCUUCguGCUC-CGUagcuuuaguaaaCGCGuGUCGa -3'
miRNA:   3'- -GGCGGAGAAG--UGGGuGCA------------GCGC-CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.