miRNA display CGI


Results 61 - 80 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24703 3' -60 NC_005264.1 + 66610 0.68 0.661059
Target:  5'- gCGCCgcgUUGCCgGCGccgUCGCGGCCc -3'
miRNA:   3'- gGCGGagaAGUGGgUGC---AGCGCCGGc -5'
24703 3' -60 NC_005264.1 + 67376 0.69 0.641552
Target:  5'- cCCGCgCUCgcugCGCCCGCcggCGCGGUa- -3'
miRNA:   3'- -GGCG-GAGaa--GUGGGUGca-GCGCCGgc -5'
24703 3' -60 NC_005264.1 + 67435 0.66 0.774154
Target:  5'- cCCGCCuaUCUgaaGCCCcuGCaccagCGCGGCCa -3'
miRNA:   3'- -GGCGG--AGAag-UGGG--UGca---GCGCCGGc -5'
24703 3' -60 NC_005264.1 + 68044 0.68 0.690141
Target:  5'- aCCGCUUCcgUGCCCgACGagGCGGCg- -3'
miRNA:   3'- -GGCGGAGaaGUGGG-UGCagCGCCGgc -5'
24703 3' -60 NC_005264.1 + 68240 0.7 0.57342
Target:  5'- aCCGCCaagCcaUGCCCGCGcCGCGGgCGg -3'
miRNA:   3'- -GGCGGa--GaaGUGGGUGCaGCGCCgGC- -5'
24703 3' -60 NC_005264.1 + 68420 0.66 0.783018
Target:  5'- gCUGCucgCUCUggacUACCgGCGcCGCGGCCu -3'
miRNA:   3'- -GGCG---GAGAa---GUGGgUGCaGCGCCGGc -5'
24703 3' -60 NC_005264.1 + 69072 0.68 0.690141
Target:  5'- aCGCCUU-UCGCCagauGCGaucUCGCGGUCGu -3'
miRNA:   3'- gGCGGAGaAGUGGg---UGC---AGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 70261 0.66 0.774154
Target:  5'- cCCGCgUCggCGuaaaaCCugGUCuGCGGCUGa -3'
miRNA:   3'- -GGCGgAGaaGUg----GGugCAG-CGCCGGC- -5'
24703 3' -60 NC_005264.1 + 70934 0.67 0.728263
Target:  5'- gUCGCCg---CGCCCGCccaucgcuGcCGCGGCCa -3'
miRNA:   3'- -GGCGGagaaGUGGGUG--------CaGCGCCGGc -5'
24703 3' -60 NC_005264.1 + 71826 0.68 0.670784
Target:  5'- gCCGCCcgCggggUCGCgaauaacgaCGCGUCGCGGCgGc -3'
miRNA:   3'- -GGCGGa-Ga---AGUGg--------GUGCAGCGCCGgC- -5'
24703 3' -60 NC_005264.1 + 72003 0.67 0.718826
Target:  5'- gCUGUUUCUU-GCUCgACGUgCGCGGCCGc -3'
miRNA:   3'- -GGCGGAGAAgUGGG-UGCA-GCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 77932 0.67 0.746903
Target:  5'- cCUGgCUCUUCccGCCCuccCGUCcugcGCGGCCc -3'
miRNA:   3'- -GGCgGAGAAG--UGGGu--GCAG----CGCCGGc -5'
24703 3' -60 NC_005264.1 + 78628 0.7 0.544666
Target:  5'- gCGCCUCUUCugUUAacCGcCGCGGCgGc -3'
miRNA:   3'- gGCGGAGAAGugGGU--GCaGCGCCGgC- -5'
24703 3' -60 NC_005264.1 + 79138 0.69 0.635693
Target:  5'- gCCGCCgc--CACCgcauuucguguacuaCACG-CGCGGCCGg -3'
miRNA:   3'- -GGCGGagaaGUGG---------------GUGCaGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 79612 0.66 0.817161
Target:  5'- gCgGCCUagaCGCCCACG-CGCaacGGCCc -3'
miRNA:   3'- -GgCGGAgaaGUGGGUGCaGCG---CCGGc -5'
24703 3' -60 NC_005264.1 + 79886 0.66 0.816335
Target:  5'- aUCGCCggcucaggccuggUCUUUGCgUGCG-CGUGGCCGa -3'
miRNA:   3'- -GGCGG-------------AGAAGUGgGUGCaGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 82560 0.73 0.386036
Target:  5'- gCCGCCUCUUUAaucUCCGCugaGCGGCCu -3'
miRNA:   3'- -GGCGGAGAAGU---GGGUGcagCGCCGGc -5'
24703 3' -60 NC_005264.1 + 82844 0.67 0.737625
Target:  5'- gCGCCUCcUCuuCCg---CGCGGCCGg -3'
miRNA:   3'- gGCGGAGaAGugGGugcaGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 84836 0.73 0.427119
Target:  5'- aUCGaCgUgaUCGCCCGCGaUCGCGGCCu -3'
miRNA:   3'- -GGC-GgAgaAGUGGGUGC-AGCGCCGGc -5'
24703 3' -60 NC_005264.1 + 85023 0.66 0.817161
Target:  5'- aCUGuCCUCUUCGUCCGCGcCGUcaauGCCGu -3'
miRNA:   3'- -GGC-GGAGAAGUGGGUGCaGCGc---CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.