miRNA display CGI


Results 81 - 100 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24703 3' -60 NC_005264.1 + 85084 0.66 0.808837
Target:  5'- uCCGCCg---CACCguuUGUgGUGGCCGg -3'
miRNA:   3'- -GGCGGagaaGUGGgu-GCAgCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 87119 0.67 0.744128
Target:  5'- -gGCCUCcggCGCCCGCGgggcgcaccagucuUCGC-GCCGa -3'
miRNA:   3'- ggCGGAGaa-GUGGGUGC--------------AGCGcCGGC- -5'
24703 3' -60 NC_005264.1 + 88014 0.71 0.535182
Target:  5'- cCUGCCcCUggUGCCCACGuuccUCGgGGCCGa -3'
miRNA:   3'- -GGCGGaGAa-GUGGGUGC----AGCgCCGGC- -5'
24703 3' -60 NC_005264.1 + 88507 0.7 0.554204
Target:  5'- aUCGCCUCUgagaUCACCgACGacgacUCGuUGGCCa -3'
miRNA:   3'- -GGCGGAGA----AGUGGgUGC-----AGC-GCCGGc -5'
24703 3' -60 NC_005264.1 + 88584 0.72 0.461786
Target:  5'- cCCGCCUCUacCGCCguguCugGagCGCGGCCa -3'
miRNA:   3'- -GGCGGAGAa-GUGG----GugCa-GCGCCGGc -5'
24703 3' -60 NC_005264.1 + 90337 0.66 0.791758
Target:  5'- gCGCCUCUcggcgcagaucuUCaACCCGcCGaCGCuGCCGg -3'
miRNA:   3'- gGCGGAGA------------AG-UGGGU-GCaGCGcCGGC- -5'
24703 3' -60 NC_005264.1 + 94207 0.69 0.625925
Target:  5'- -aGCCUCgUCGCCUaccacGCGUugcuacgaugcgcuaCGCGGCCa -3'
miRNA:   3'- ggCGGAGaAGUGGG-----UGCA---------------GCGCCGGc -5'
24703 3' -60 NC_005264.1 + 96302 0.68 0.68048
Target:  5'- aUCGCCga--CGCCCGCaaCGCGGUCGu -3'
miRNA:   3'- -GGCGGagaaGUGGGUGcaGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 97598 0.68 0.709321
Target:  5'- aCCGCUUCcUCGgCCGCG--GCGGCUa -3'
miRNA:   3'- -GGCGGAGaAGUgGGUGCagCGCCGGc -5'
24703 3' -60 NC_005264.1 + 98426 0.67 0.756089
Target:  5'- aUCGCCg---UGCCCGCGgCGuCGGCCu -3'
miRNA:   3'- -GGCGGagaaGUGGGUGCaGC-GCCGGc -5'
24703 3' -60 NC_005264.1 + 104201 0.66 0.806311
Target:  5'- uCCGCC-CUUCAcaguaaaccguuauCCUACG-CGCaGCCa -3'
miRNA:   3'- -GGCGGaGAAGU--------------GGGUGCaGCGcCGGc -5'
24703 3' -60 NC_005264.1 + 104579 0.66 0.774154
Target:  5'- gCGCCaugcCGCCCACGggaUCG-GGCCGa -3'
miRNA:   3'- gGCGGagaaGUGGGUGC---AGCgCCGGC- -5'
24703 3' -60 NC_005264.1 + 110732 0.68 0.68048
Target:  5'- -gGCCUCcu-GCUCGCuUCGCGGCCu -3'
miRNA:   3'- ggCGGAGaagUGGGUGcAGCGCCGGc -5'
24703 3' -60 NC_005264.1 + 114132 0.68 0.699757
Target:  5'- gCCGCCUCaUCuCCCGCGa-GCGaCCGc -3'
miRNA:   3'- -GGCGGAGaAGuGGGUGCagCGCcGGC- -5'
24703 3' -60 NC_005264.1 + 117499 0.67 0.756089
Target:  5'- uUCGCCUCgucucgggCGCggCGCGUCuGCGGUCGc -3'
miRNA:   3'- -GGCGGAGaa------GUGg-GUGCAG-CGCCGGC- -5'
24703 3' -60 NC_005264.1 + 117682 0.71 0.516395
Target:  5'- gCCGCgCUCUcCugCCuccGCGUCGUGGCg- -3'
miRNA:   3'- -GGCG-GAGAaGugGG---UGCAGCGCCGgc -5'
24703 3' -60 NC_005264.1 + 118159 0.66 0.800367
Target:  5'- aUGCCguggcCGCCCAUGUCugGCGGCuCGu -3'
miRNA:   3'- gGCGGagaa-GUGGGUGCAG--CGCCG-GC- -5'
24703 3' -60 NC_005264.1 + 118808 0.66 0.799512
Target:  5'- gCgGCCUCUaCGCCCAacggcuggacgcaUGagGCGGCUa -3'
miRNA:   3'- -GgCGGAGAaGUGGGU-------------GCagCGCCGGc -5'
24703 3' -60 NC_005264.1 + 118910 0.68 0.699757
Target:  5'- aCCGCgUaCUUgGCCCucgACGUCGaggcgaCGGCCGc -3'
miRNA:   3'- -GGCGgA-GAAgUGGG---UGCAGC------GCCGGC- -5'
24703 3' -60 NC_005264.1 + 118984 0.68 0.699757
Target:  5'- uCCGUCUCUUC-CCCGCG--GCaGCCc -3'
miRNA:   3'- -GGCGGAGAAGuGGGUGCagCGcCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.