miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24703 3' -60 NC_005264.1 + 162696 0.67 0.746903
Target:  5'- gCGCUgcg-CGCCgGCGUUaagGCGGCCGc -3'
miRNA:   3'- gGCGGagaaGUGGgUGCAG---CGCCGGC- -5'
24703 3' -60 NC_005264.1 + 162206 0.68 0.699757
Target:  5'- -aGCCUCUaUCgcgcuGCCUGCGaCGCGGgCCGg -3'
miRNA:   3'- ggCGGAGA-AG-----UGGGUGCaGCGCC-GGC- -5'
24703 3' -60 NC_005264.1 + 159960 0.66 0.800367
Target:  5'- cCCGCCgcgCcgCGCCCcgguCGaUCGCaGCCGc -3'
miRNA:   3'- -GGCGGa--GaaGUGGGu---GC-AGCGcCGGC- -5'
24703 3' -60 NC_005264.1 + 159227 0.66 0.800367
Target:  5'- cCCGCCcacagCGCCCAcCGUCcaccaCGGCCu -3'
miRNA:   3'- -GGCGGagaa-GUGGGU-GCAGc----GCCGGc -5'
24703 3' -60 NC_005264.1 + 159171 0.69 0.651313
Target:  5'- gCCGCCgagaCggcCGCCCAuCGUCgagacgGCGGCCa -3'
miRNA:   3'- -GGCGGa---Gaa-GUGGGU-GCAG------CGCCGGc -5'
24703 3' -60 NC_005264.1 + 158673 0.66 0.783018
Target:  5'- uCCGCUUCc-CACaCCGCGgCGUGGgCGg -3'
miRNA:   3'- -GGCGGAGaaGUG-GGUGCaGCGCCgGC- -5'
24703 3' -60 NC_005264.1 + 157783 0.66 0.790889
Target:  5'- uCgGCgUCUUCccagcuaggcggcGCCCACGacgcggaaccUCGUGGCCu -3'
miRNA:   3'- -GgCGgAGAAG-------------UGGGUGC----------AGCGCCGGc -5'
24703 3' -60 NC_005264.1 + 157564 0.66 0.783018
Target:  5'- gCCGCCg---C-CCCGcCGUC-CGGCCGc -3'
miRNA:   3'- -GGCGGagaaGuGGGU-GCAGcGCCGGC- -5'
24703 3' -60 NC_005264.1 + 157201 0.69 0.651313
Target:  5'- aCCGCCgcgCUguggggaCACCUAgCGUcgCGCGGCCc -3'
miRNA:   3'- -GGCGGa--GAa------GUGGGU-GCA--GCGCCGGc -5'
24703 3' -60 NC_005264.1 + 156834 0.69 0.602513
Target:  5'- -aGCCUCccCGCCC--GUCGgGGCCGa -3'
miRNA:   3'- ggCGGAGaaGUGGGugCAGCgCCGGC- -5'
24703 3' -60 NC_005264.1 + 156193 0.67 0.746903
Target:  5'- uCUGCCggagCUUCcggacauguGCCCcCG-CGUGGCCGu -3'
miRNA:   3'- -GGCGGa---GAAG---------UGGGuGCaGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 154839 0.67 0.756089
Target:  5'- gCGCCUCUgccggC-CCCGCaaUgGCGGCCc -3'
miRNA:   3'- gGCGGAGAa----GuGGGUGc-AgCGCCGGc -5'
24703 3' -60 NC_005264.1 + 152605 0.68 0.709321
Target:  5'- aCCGCgUCguucgggUCACCCGCGgCGCGuuUGg -3'
miRNA:   3'- -GGCGgAGa------AGUGGGUGCaGCGCcgGC- -5'
24703 3' -60 NC_005264.1 + 151443 0.66 0.772368
Target:  5'- -aGCUUCaauaucacuaaCAUCCGCGaCGCGGCCGc -3'
miRNA:   3'- ggCGGAGaa---------GUGGGUGCaGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 151053 0.69 0.631786
Target:  5'- aCCGCCUCgggCugCCcCGgagUGCGaGCCa -3'
miRNA:   3'- -GGCGGAGaa-GugGGuGCa--GCGC-CGGc -5'
24703 3' -60 NC_005264.1 + 149847 0.68 0.670784
Target:  5'- uCCGCCUCgugcUCgaacggGCUCGCGUCGUcGUCGg -3'
miRNA:   3'- -GGCGGAGa---AG------UGGGUGCAGCGcCGGC- -5'
24703 3' -60 NC_005264.1 + 149416 0.67 0.756089
Target:  5'- gCGUCUCggCGgCgGCgGUCGCGcGCCGg -3'
miRNA:   3'- gGCGGAGaaGUgGgUG-CAGCGC-CGGC- -5'
24703 3' -60 NC_005264.1 + 149225 0.66 0.774154
Target:  5'- gCCGCCcCU--GCCCGCGUcccgacCGCGaucGCCGg -3'
miRNA:   3'- -GGCGGaGAagUGGGUGCA------GCGC---CGGC- -5'
24703 3' -60 NC_005264.1 + 146555 0.66 0.817161
Target:  5'- cCCaGCCUCUaCAUCCugGUCGUGaagaUCGa -3'
miRNA:   3'- -GG-CGGAGAaGUGGGugCAGCGCc---GGC- -5'
24703 3' -60 NC_005264.1 + 146168 0.7 0.56379
Target:  5'- aUGCCUCg-CAUgCACGUCGCguGGCCu -3'
miRNA:   3'- gGCGGAGaaGUGgGUGCAGCG--CCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.