miRNA display CGI


Results 21 - 40 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24703 3' -60 NC_005264.1 + 144776 0.68 0.68048
Target:  5'- aUGCC-CgcgCGCCCugGcUCGCGGCg- -3'
miRNA:   3'- gGCGGaGaa-GUGGGugC-AGCGCCGgc -5'
24703 3' -60 NC_005264.1 + 141474 0.68 0.690141
Target:  5'- -gGCCUCUUucCACCgGcCGagGCGGCCc -3'
miRNA:   3'- ggCGGAGAA--GUGGgU-GCagCGCCGGc -5'
24703 3' -60 NC_005264.1 + 139519 0.68 0.68048
Target:  5'- aCGCCUCUUCcuggagcagcaGCaugggCACGaUCGCGGCUu -3'
miRNA:   3'- gGCGGAGAAG-----------UGg----GUGC-AGCGCCGGc -5'
24703 3' -60 NC_005264.1 + 139073 0.71 0.516395
Target:  5'- gCCGguuCCUUgcugUCGCCUauuacgACGUCGCGGCUGc -3'
miRNA:   3'- -GGC---GGAGa---AGUGGG------UGCAGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 138659 0.67 0.737625
Target:  5'- gCGCCagaCUUUACCgAC--CGCGGCCGc -3'
miRNA:   3'- gGCGGa--GAAGUGGgUGcaGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 137628 0.66 0.800367
Target:  5'- aCUGCC-CUggcCACCgugugcgccaaCACGUaCGCGGCCc -3'
miRNA:   3'- -GGCGGaGAa--GUGG-----------GUGCA-GCGCCGGc -5'
24703 3' -60 NC_005264.1 + 137240 0.68 0.68048
Target:  5'- uUCGUCUCgcCGCUCuCGUCcgGCGGCCa -3'
miRNA:   3'- -GGCGGAGaaGUGGGuGCAG--CGCCGGc -5'
24703 3' -60 NC_005264.1 + 134782 0.7 0.554204
Target:  5'- uUCGCUUCcgcgcgcuUUUACCCgGCGUCGCGcgcGCCGg -3'
miRNA:   3'- -GGCGGAG--------AAGUGGG-UGCAGCGC---CGGC- -5'
24703 3' -60 NC_005264.1 + 133876 0.68 0.68048
Target:  5'- uCCGCgCUCagagucuuggcgUUCACCCACGgcucguaCGCGGUa- -3'
miRNA:   3'- -GGCG-GAG------------AAGUGGGUGCa------GCGCCGgc -5'
24703 3' -60 NC_005264.1 + 133379 0.66 0.817161
Target:  5'- aCCGCCcCccaAUCCGCGUgG-GGCCGa -3'
miRNA:   3'- -GGCGGaGaagUGGGUGCAgCgCCGGC- -5'
24703 3' -60 NC_005264.1 + 133215 0.72 0.479667
Target:  5'- aCGaCCUCUUUACCC-CGUgCGCcGCCGc -3'
miRNA:   3'- gGC-GGAGAAGUGGGuGCA-GCGcCGGC- -5'
24703 3' -60 NC_005264.1 + 131272 0.68 0.709321
Target:  5'- cCCaCCUCUggCGCcuCCACGUCGggaaUGGCCGu -3'
miRNA:   3'- -GGcGGAGAa-GUG--GGUGCAGC----GCCGGC- -5'
24703 3' -60 NC_005264.1 + 128968 0.69 0.60154
Target:  5'- gCCGCCUCgagcggaCGCuCCACGUucuucagcucugcCGCGGCgCGc -3'
miRNA:   3'- -GGCGGAGaa-----GUG-GGUGCA-------------GCGCCG-GC- -5'
24703 3' -60 NC_005264.1 + 128525 0.7 0.590845
Target:  5'- gCCGCCUCgaaggcgcuauagUUCcugugACCCACGUauauuucCGCGGCgGa -3'
miRNA:   3'- -GGCGGAG-------------AAG-----UGGGUGCA-------GCGCCGgC- -5'
24703 3' -60 NC_005264.1 + 128021 0.68 0.68048
Target:  5'- -aGCCUCUgcagcaacaUCAUuagcgcuaCCGCGUCGaUGGCCGc -3'
miRNA:   3'- ggCGGAGA---------AGUG--------GGUGCAGC-GCCGGC- -5'
24703 3' -60 NC_005264.1 + 127833 0.66 0.817161
Target:  5'- gCGCucCUCUUCgaGCgCCGC-UCGCGGCaCGg -3'
miRNA:   3'- gGCG--GAGAAG--UG-GGUGcAGCGCCG-GC- -5'
24703 3' -60 NC_005264.1 + 127077 1.09 0.001705
Target:  5'- uCCGCCUCUUCACCCACGUCGCGGCCGc -3'
miRNA:   3'- -GGCGGAGAAGUGGGUGCAGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 126556 0.67 0.756089
Target:  5'- uCCGcCCUCUccUCGCCUACGcaCGaggaCGGCCu -3'
miRNA:   3'- -GGC-GGAGA--AGUGGGUGCa-GC----GCCGGc -5'
24703 3' -60 NC_005264.1 + 125263 0.73 0.418695
Target:  5'- gCCGCCgcgagaCUUgcCGCCUcCGUCGCGGUCGu -3'
miRNA:   3'- -GGCGGa-----GAA--GUGGGuGCAGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 124266 0.67 0.757002
Target:  5'- gCgGCCUCggguacguuuagagCGCCgGgaggcgaGUCGCGGCCGg -3'
miRNA:   3'- -GgCGGAGaa------------GUGGgUg------CAGCGCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.