Results 41 - 60 of 149 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24703 | 3' | -60 | NC_005264.1 | + | 123448 | 0.69 | 0.622019 |
Target: 5'- gUGCCccCUUCGCCgACGUCGUcaucgucugaGGCCu -3' miRNA: 3'- gGCGGa-GAAGUGGgUGCAGCG----------CCGGc -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 123170 | 0.66 | 0.774154 |
Target: 5'- gCCGCUUgucgcgaugCUUgcCGCCCACGcCGCGGUg- -3' miRNA: 3'- -GGCGGA---------GAA--GUGGGUGCaGCGCCGgc -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 123032 | 0.68 | 0.68048 |
Target: 5'- aUGCCUCcUCGCCCACcaggggcuUgGCgGGCCGa -3' miRNA: 3'- gGCGGAGaAGUGGGUGc-------AgCG-CCGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 122552 | 0.72 | 0.452978 |
Target: 5'- uCCGCCUCgUCgaaCCGCGaCGCGGCgGc -3' miRNA: 3'- -GGCGGAGaAGug-GGUGCaGCGCCGgC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 121882 | 0.69 | 0.631786 |
Target: 5'- gCGCCg--UCGCCCGC--UGCGGCUGc -3' miRNA: 3'- gGCGGagaAGUGGGUGcaGCGCCGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 119649 | 0.71 | 0.525757 |
Target: 5'- cCCGCCg----GCCCGCGUCGCaGGCa- -3' miRNA: 3'- -GGCGGagaagUGGGUGCAGCG-CCGgc -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 119473 | 0.67 | 0.746903 |
Target: 5'- gCGUCUCg-UACCUAUG-CGCGGUCGu -3' miRNA: 3'- gGCGGAGaaGUGGGUGCaGCGCCGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 119169 | 0.68 | 0.68048 |
Target: 5'- gCCGCCUUaaCGCCgGCGcgcaGCGcGCCGa -3' miRNA: 3'- -GGCGGAGaaGUGGgUGCag--CGC-CGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 119166 | 0.66 | 0.817161 |
Target: 5'- gCCGCCgg--CACCaaagaACGguucaGCGGCCa -3' miRNA: 3'- -GGCGGagaaGUGGg----UGCag---CGCCGGc -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 118984 | 0.68 | 0.699757 |
Target: 5'- uCCGUCUCUUC-CCCGCG--GCaGCCc -3' miRNA: 3'- -GGCGGAGAAGuGGGUGCagCGcCGGc -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 118910 | 0.68 | 0.699757 |
Target: 5'- aCCGCgUaCUUgGCCCucgACGUCGaggcgaCGGCCGc -3' miRNA: 3'- -GGCGgA-GAAgUGGG---UGCAGC------GCCGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 118808 | 0.66 | 0.799512 |
Target: 5'- gCgGCCUCUaCGCCCAacggcuggacgcaUGagGCGGCUa -3' miRNA: 3'- -GgCGGAGAaGUGGGU-------------GCagCGCCGGc -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 118159 | 0.66 | 0.800367 |
Target: 5'- aUGCCguggcCGCCCAUGUCugGCGGCuCGu -3' miRNA: 3'- gGCGGagaa-GUGGGUGCAG--CGCCG-GC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 117682 | 0.71 | 0.516395 |
Target: 5'- gCCGCgCUCUcCugCCuccGCGUCGUGGCg- -3' miRNA: 3'- -GGCG-GAGAaGugGG---UGCAGCGCCGgc -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 117499 | 0.67 | 0.756089 |
Target: 5'- uUCGCCUCgucucgggCGCggCGCGUCuGCGGUCGc -3' miRNA: 3'- -GGCGGAGaa------GUGg-GUGCAG-CGCCGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 114132 | 0.68 | 0.699757 |
Target: 5'- gCCGCCUCaUCuCCCGCGa-GCGaCCGc -3' miRNA: 3'- -GGCGGAGaAGuGGGUGCagCGCcGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 110732 | 0.68 | 0.68048 |
Target: 5'- -gGCCUCcu-GCUCGCuUCGCGGCCu -3' miRNA: 3'- ggCGGAGaagUGGGUGcAGCGCCGGc -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 104579 | 0.66 | 0.774154 |
Target: 5'- gCGCCaugcCGCCCACGggaUCG-GGCCGa -3' miRNA: 3'- gGCGGagaaGUGGGUGC---AGCgCCGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 104201 | 0.66 | 0.806311 |
Target: 5'- uCCGCC-CUUCAcaguaaaccguuauCCUACG-CGCaGCCa -3' miRNA: 3'- -GGCGGaGAAGU--------------GGGUGCaGCGcCGGc -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 98426 | 0.67 | 0.756089 |
Target: 5'- aUCGCCg---UGCCCGCGgCGuCGGCCu -3' miRNA: 3'- -GGCGGagaaGUGGGUGCaGC-GCCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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