Results 61 - 80 of 149 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24703 | 3' | -60 | NC_005264.1 | + | 97598 | 0.68 | 0.709321 |
Target: 5'- aCCGCUUCcUCGgCCGCG--GCGGCUa -3' miRNA: 3'- -GGCGGAGaAGUgGGUGCagCGCCGGc -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 96302 | 0.68 | 0.68048 |
Target: 5'- aUCGCCga--CGCCCGCaaCGCGGUCGu -3' miRNA: 3'- -GGCGGagaaGUGGGUGcaGCGCCGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 94207 | 0.69 | 0.625925 |
Target: 5'- -aGCCUCgUCGCCUaccacGCGUugcuacgaugcgcuaCGCGGCCa -3' miRNA: 3'- ggCGGAGaAGUGGG-----UGCA---------------GCGCCGGc -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 90337 | 0.66 | 0.791758 |
Target: 5'- gCGCCUCUcggcgcagaucuUCaACCCGcCGaCGCuGCCGg -3' miRNA: 3'- gGCGGAGA------------AG-UGGGU-GCaGCGcCGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 88584 | 0.72 | 0.461786 |
Target: 5'- cCCGCCUCUacCGCCguguCugGagCGCGGCCa -3' miRNA: 3'- -GGCGGAGAa-GUGG----GugCa-GCGCCGGc -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 88507 | 0.7 | 0.554204 |
Target: 5'- aUCGCCUCUgagaUCACCgACGacgacUCGuUGGCCa -3' miRNA: 3'- -GGCGGAGA----AGUGGgUGC-----AGC-GCCGGc -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 88014 | 0.71 | 0.535182 |
Target: 5'- cCUGCCcCUggUGCCCACGuuccUCGgGGCCGa -3' miRNA: 3'- -GGCGGaGAa-GUGGGUGC----AGCgCCGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 87119 | 0.67 | 0.744128 |
Target: 5'- -gGCCUCcggCGCCCGCGgggcgcaccagucuUCGC-GCCGa -3' miRNA: 3'- ggCGGAGaa-GUGGGUGC--------------AGCGcCGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 85084 | 0.66 | 0.808837 |
Target: 5'- uCCGCCg---CACCguuUGUgGUGGCCGg -3' miRNA: 3'- -GGCGGagaaGUGGgu-GCAgCGCCGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 85023 | 0.66 | 0.817161 |
Target: 5'- aCUGuCCUCUUCGUCCGCGcCGUcaauGCCGu -3' miRNA: 3'- -GGC-GGAGAAGUGGGUGCaGCGc---CGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 84836 | 0.73 | 0.427119 |
Target: 5'- aUCGaCgUgaUCGCCCGCGaUCGCGGCCu -3' miRNA: 3'- -GGC-GgAgaAGUGGGUGC-AGCGCCGGc -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 82844 | 0.67 | 0.737625 |
Target: 5'- gCGCCUCcUCuuCCg---CGCGGCCGg -3' miRNA: 3'- gGCGGAGaAGugGGugcaGCGCCGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 82560 | 0.73 | 0.386036 |
Target: 5'- gCCGCCUCUUUAaucUCCGCugaGCGGCCu -3' miRNA: 3'- -GGCGGAGAAGU---GGGUGcagCGCCGGc -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 79886 | 0.66 | 0.816335 |
Target: 5'- aUCGCCggcucaggccuggUCUUUGCgUGCG-CGUGGCCGa -3' miRNA: 3'- -GGCGG-------------AGAAGUGgGUGCaGCGCCGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 79612 | 0.66 | 0.817161 |
Target: 5'- gCgGCCUagaCGCCCACG-CGCaacGGCCc -3' miRNA: 3'- -GgCGGAgaaGUGGGUGCaGCG---CCGGc -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 79138 | 0.69 | 0.635693 |
Target: 5'- gCCGCCgc--CACCgcauuucguguacuaCACG-CGCGGCCGg -3' miRNA: 3'- -GGCGGagaaGUGG---------------GUGCaGCGCCGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 78628 | 0.7 | 0.544666 |
Target: 5'- gCGCCUCUUCugUUAacCGcCGCGGCgGc -3' miRNA: 3'- gGCGGAGAAGugGGU--GCaGCGCCGgC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 77932 | 0.67 | 0.746903 |
Target: 5'- cCUGgCUCUUCccGCCCuccCGUCcugcGCGGCCc -3' miRNA: 3'- -GGCgGAGAAG--UGGGu--GCAG----CGCCGGc -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 72003 | 0.67 | 0.718826 |
Target: 5'- gCUGUUUCUU-GCUCgACGUgCGCGGCCGc -3' miRNA: 3'- -GGCGGAGAAgUGGG-UGCA-GCGCCGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 71826 | 0.68 | 0.670784 |
Target: 5'- gCCGCCcgCggggUCGCgaauaacgaCGCGUCGCGGCgGc -3' miRNA: 3'- -GGCGGa-Ga---AGUGg--------GUGCAGCGCCGgC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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