miRNA display CGI


Results 81 - 100 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24703 3' -60 NC_005264.1 + 70934 0.67 0.728263
Target:  5'- gUCGCCg---CGCCCGCccaucgcuGcCGCGGCCa -3'
miRNA:   3'- -GGCGGagaaGUGGGUG--------CaGCGCCGGc -5'
24703 3' -60 NC_005264.1 + 70261 0.66 0.774154
Target:  5'- cCCGCgUCggCGuaaaaCCugGUCuGCGGCUGa -3'
miRNA:   3'- -GGCGgAGaaGUg----GGugCAG-CGCCGGC- -5'
24703 3' -60 NC_005264.1 + 69072 0.68 0.690141
Target:  5'- aCGCCUU-UCGCCagauGCGaucUCGCGGUCGu -3'
miRNA:   3'- gGCGGAGaAGUGGg---UGC---AGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 68420 0.66 0.783018
Target:  5'- gCUGCucgCUCUggacUACCgGCGcCGCGGCCu -3'
miRNA:   3'- -GGCG---GAGAa---GUGGgUGCaGCGCCGGc -5'
24703 3' -60 NC_005264.1 + 68240 0.7 0.57342
Target:  5'- aCCGCCaagCcaUGCCCGCGcCGCGGgCGg -3'
miRNA:   3'- -GGCGGa--GaaGUGGGUGCaGCGCCgGC- -5'
24703 3' -60 NC_005264.1 + 68044 0.68 0.690141
Target:  5'- aCCGCUUCcgUGCCCgACGagGCGGCg- -3'
miRNA:   3'- -GGCGGAGaaGUGGG-UGCagCGCCGgc -5'
24703 3' -60 NC_005264.1 + 67435 0.66 0.774154
Target:  5'- cCCGCCuaUCUgaaGCCCcuGCaccagCGCGGCCa -3'
miRNA:   3'- -GGCGG--AGAag-UGGG--UGca---GCGCCGGc -5'
24703 3' -60 NC_005264.1 + 67376 0.69 0.641552
Target:  5'- cCCGCgCUCgcugCGCCCGCcggCGCGGUa- -3'
miRNA:   3'- -GGCG-GAGaa--GUGGGUGca-GCGCCGgc -5'
24703 3' -60 NC_005264.1 + 66610 0.68 0.661059
Target:  5'- gCGCCgcgUUGCCgGCGccgUCGCGGCCc -3'
miRNA:   3'- gGCGGagaAGUGGgUGC---AGCGCCGGc -5'
24703 3' -60 NC_005264.1 + 65829 0.66 0.783018
Target:  5'- gCCGCCUCUUCguGCUC-CGUagcuuuaguaaaCGCGuGUCGa -3'
miRNA:   3'- -GGCGGAGAAG--UGGGuGCA------------GCGC-CGGC- -5'
24703 3' -60 NC_005264.1 + 62825 0.67 0.745054
Target:  5'- gCCGCCgcggccuUCUUUAuuUCCGCGUCGCGuuucgucGCCu -3'
miRNA:   3'- -GGCGG-------AGAAGU--GGGUGCAGCGC-------CGGc -5'
24703 3' -60 NC_005264.1 + 62741 0.66 0.774154
Target:  5'- aCCGCgUCgUCGCUgaGCccCGCGGCCGc -3'
miRNA:   3'- -GGCGgAGaAGUGGg-UGcaGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 62283 0.7 0.544666
Target:  5'- gCGCC-CUUguCCCGCGaUCuCGGCCGu -3'
miRNA:   3'- gGCGGaGAAguGGGUGC-AGcGCCGGC- -5'
24703 3' -60 NC_005264.1 + 60979 0.68 0.68048
Target:  5'- uUGUCUCggCGCCgACuaUCGCGGCCu -3'
miRNA:   3'- gGCGGAGaaGUGGgUGc-AGCGCCGGc -5'
24703 3' -60 NC_005264.1 + 59088 0.66 0.808837
Target:  5'- cCCGCCUCagcaugaACCUaaGCaUgGCGGCCGc -3'
miRNA:   3'- -GGCGGAGaag----UGGG--UGcAgCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 58693 0.67 0.737625
Target:  5'- cCCgGCCUCUaugaCGgCCGCGUUuacuaggcggGCGGCCa -3'
miRNA:   3'- -GG-CGGAGAa---GUgGGUGCAG----------CGCCGGc -5'
24703 3' -60 NC_005264.1 + 51078 0.68 0.670784
Target:  5'- gCCGCCUag--ACCUGCuUCGCGGUCGc -3'
miRNA:   3'- -GGCGGAgaagUGGGUGcAGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 49787 0.72 0.435642
Target:  5'- uCCGUCUCgcgUaagaucgccgcgGCCCA-GUCGCGGCCGc -3'
miRNA:   3'- -GGCGGAGaa-G------------UGGGUgCAGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 48696 0.66 0.817161
Target:  5'- uCUGCUcgUCgcggUCGCUCGCGggagaugagGCGGCCGg -3'
miRNA:   3'- -GGCGG--AGa---AGUGGGUGCag-------CGCCGGC- -5'
24703 3' -60 NC_005264.1 + 47002 0.69 0.631786
Target:  5'- cCUGCUUCUgaacagaCACCuCACGguggaaCGCGGCCu -3'
miRNA:   3'- -GGCGGAGAa------GUGG-GUGCa-----GCGCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.