miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24703 3' -60 NC_005264.1 + 127077 1.09 0.001705
Target:  5'- uCCGCCUCUUCACCCACGUCGCGGCCGc -3'
miRNA:   3'- -GGCGGAGAAGUGGGUGCAGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 27832 0.69 0.622019
Target:  5'- -gGCCUagaUCGCgCCACuGUCGCGGCgGc -3'
miRNA:   3'- ggCGGAga-AGUG-GGUG-CAGCGCCGgC- -5'
24703 3' -60 NC_005264.1 + 121882 0.69 0.631786
Target:  5'- gCGCCg--UCGCCCGC--UGCGGCUGc -3'
miRNA:   3'- gGCGGagaAGUGGGUGcaGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 146555 0.66 0.817161
Target:  5'- cCCaGCCUCUaCAUCCugGUCGUGaagaUCGa -3'
miRNA:   3'- -GG-CGGAGAaGUGGGugCAGCGCc---GGC- -5'
24703 3' -60 NC_005264.1 + 84836 0.73 0.427119
Target:  5'- aUCGaCgUgaUCGCCCGCGaUCGCGGCCu -3'
miRNA:   3'- -GGC-GgAgaAGUGGGUGC-AGCGCCGGc -5'
24703 3' -60 NC_005264.1 + 122552 0.72 0.452978
Target:  5'- uCCGCCUCgUCgaaCCGCGaCGCGGCgGc -3'
miRNA:   3'- -GGCGGAGaAGug-GGUGCaGCGCCGgC- -5'
24703 3' -60 NC_005264.1 + 25545 0.71 0.488733
Target:  5'- gUGCCgua-CGCCCGCGUCGCcGCCa -3'
miRNA:   3'- gGCGGagaaGUGGGUGCAGCGcCGGc -5'
24703 3' -60 NC_005264.1 + 117682 0.71 0.516395
Target:  5'- gCCGCgCUCUcCugCCuccGCGUCGUGGCg- -3'
miRNA:   3'- -GGCG-GAGAaGugGG---UGCAGCGCCGgc -5'
24703 3' -60 NC_005264.1 + 78628 0.7 0.544666
Target:  5'- gCGCCUCUUCugUUAacCGcCGCGGCgGc -3'
miRNA:   3'- gGCGGAGAAGugGGU--GCaGCGCCGgC- -5'
24703 3' -60 NC_005264.1 + 8758 0.69 0.621043
Target:  5'- gCGCCUCUUCcauaugaGCCUcuACGgcggCGCGGuuGu -3'
miRNA:   3'- gGCGGAGAAG-------UGGG--UGCa---GCGCCggC- -5'
24703 3' -60 NC_005264.1 + 146168 0.7 0.56379
Target:  5'- aUGCCUCg-CAUgCACGUCGCguGGCCu -3'
miRNA:   3'- gGCGGAGaaGUGgGUGCAGCG--CCGGc -5'
24703 3' -60 NC_005264.1 + 88014 0.71 0.535182
Target:  5'- cCUGCCcCUggUGCCCACGuuccUCGgGGCCGa -3'
miRNA:   3'- -GGCGGaGAa-GUGGGUGC----AGCgCCGGC- -5'
24703 3' -60 NC_005264.1 + 19862 0.73 0.386036
Target:  5'- cCCGCCUCau-GCCCGagagacCGcCGCGGCCGc -3'
miRNA:   3'- -GGCGGAGaagUGGGU------GCaGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 68240 0.7 0.57342
Target:  5'- aCCGCCaagCcaUGCCCGCGcCGCGGgCGg -3'
miRNA:   3'- -GGCGGa--GaaGUGGGUGCaGCGCCgGC- -5'
24703 3' -60 NC_005264.1 + 34618 0.73 0.418695
Target:  5'- aCCGUUUgUUCaagGCCCGCGggguguUCGCGGCCa -3'
miRNA:   3'- -GGCGGAgAAG---UGGGUGC------AGCGCCGGc -5'
24703 3' -60 NC_005264.1 + 119649 0.71 0.525757
Target:  5'- cCCGCCg----GCCCGCGUCGCaGGCa- -3'
miRNA:   3'- -GGCGGagaagUGGGUGCAGCG-CCGgc -5'
24703 3' -60 NC_005264.1 + 156834 0.69 0.602513
Target:  5'- -aGCCUCccCGCCC--GUCGgGGCCGa -3'
miRNA:   3'- ggCGGAGaaGUGGGugCAGCgCCGGC- -5'
24703 3' -60 NC_005264.1 + 123448 0.69 0.622019
Target:  5'- gUGCCccCUUCGCCgACGUCGUcaucgucugaGGCCu -3'
miRNA:   3'- gGCGGa-GAAGUGGgUGCAGCG----------CCGGc -5'
24703 3' -60 NC_005264.1 + 125263 0.73 0.418695
Target:  5'- gCCGCCgcgagaCUUgcCGCCUcCGUCGCGGUCGu -3'
miRNA:   3'- -GGCGGa-----GAA--GUGGGuGCAGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 88584 0.72 0.461786
Target:  5'- cCCGCCUCUacCGCCguguCugGagCGCGGCCa -3'
miRNA:   3'- -GGCGGAGAa-GUGG----GugCa-GCGCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.