miRNA display CGI


Results 41 - 60 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24703 3' -60 NC_005264.1 + 68044 0.68 0.690141
Target:  5'- aCCGCUUCcgUGCCCgACGagGCGGCg- -3'
miRNA:   3'- -GGCGGAGaaGUGGG-UGCagCGCCGgc -5'
24703 3' -60 NC_005264.1 + 27832 0.69 0.622019
Target:  5'- -gGCCUagaUCGCgCCACuGUCGCGGCgGc -3'
miRNA:   3'- ggCGGAga-AGUG-GGUG-CAGCGCCGgC- -5'
24703 3' -60 NC_005264.1 + 34618 0.73 0.418695
Target:  5'- aCCGUUUgUUCaagGCCCGCGggguguUCGCGGCCa -3'
miRNA:   3'- -GGCGGAgAAG---UGGGUGC------AGCGCCGGc -5'
24703 3' -60 NC_005264.1 + 123032 0.68 0.68048
Target:  5'- aUGCCUCcUCGCCCACcaggggcuUgGCgGGCCGa -3'
miRNA:   3'- gGCGGAGaAGUGGGUGc-------AgCG-CCGGC- -5'
24703 3' -60 NC_005264.1 + 19862 0.73 0.386036
Target:  5'- cCCGCCUCau-GCCCGagagacCGcCGCGGCCGc -3'
miRNA:   3'- -GGCGGAGaagUGGGU------GCaGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 62741 0.66 0.774154
Target:  5'- aCCGCgUCgUCGCUgaGCccCGCGGCCGc -3'
miRNA:   3'- -GGCGgAGaAGUGGg-UGcaGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 84836 0.73 0.427119
Target:  5'- aUCGaCgUgaUCGCCCGCGaUCGCGGCCu -3'
miRNA:   3'- -GGC-GgAgaAGUGGGUGC-AGCGCCGGc -5'
24703 3' -60 NC_005264.1 + 124266 0.67 0.757002
Target:  5'- gCgGCCUCggguacguuuagagCGCCgGgaggcgaGUCGCGGCCGg -3'
miRNA:   3'- -GgCGGAGaa------------GUGGgUg------CAGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 126556 0.67 0.756089
Target:  5'- uCCGcCCUCUccUCGCCUACGcaCGaggaCGGCCu -3'
miRNA:   3'- -GGC-GGAGA--AGUGGGUGCa-GC----GCCGGc -5'
24703 3' -60 NC_005264.1 + 62825 0.67 0.745054
Target:  5'- gCCGCCgcggccuUCUUUAuuUCCGCGUCGCGuuucgucGCCu -3'
miRNA:   3'- -GGCGG-------AGAAGU--GGGUGCAGCGC-------CGGc -5'
24703 3' -60 NC_005264.1 + 24651 0.68 0.709321
Target:  5'- gCCGCCUUgucUCugCaGCGagGCaGGCCGg -3'
miRNA:   3'- -GGCGGAGa--AGugGgUGCagCG-CCGGC- -5'
24703 3' -60 NC_005264.1 + 162206 0.68 0.699757
Target:  5'- -aGCCUCUaUCgcgcuGCCUGCGaCGCGGgCCGg -3'
miRNA:   3'- ggCGGAGA-AG-----UGGGUGCaGCGCC-GGC- -5'
24703 3' -60 NC_005264.1 + 114132 0.68 0.699757
Target:  5'- gCCGCCUCaUCuCCCGCGa-GCGaCCGc -3'
miRNA:   3'- -GGCGGAGaAGuGGGUGCagCGCcGGC- -5'
24703 3' -60 NC_005264.1 + 119169 0.68 0.68048
Target:  5'- gCCGCCUUaaCGCCgGCGcgcaGCGcGCCGa -3'
miRNA:   3'- -GGCGGAGaaGUGGgUGCag--CGC-CGGC- -5'
24703 3' -60 NC_005264.1 + 51078 0.68 0.670784
Target:  5'- gCCGCCUag--ACCUGCuUCGCGGUCGc -3'
miRNA:   3'- -GGCGGAgaagUGGGUGcAGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 157201 0.69 0.651313
Target:  5'- aCCGCCgcgCUguggggaCACCUAgCGUcgCGCGGCCc -3'
miRNA:   3'- -GGCGGa--GAa------GUGGGU-GCA--GCGCCGGc -5'
24703 3' -60 NC_005264.1 + 121882 0.69 0.631786
Target:  5'- gCGCCg--UCGCCCGC--UGCGGCUGc -3'
miRNA:   3'- gGCGGagaAGUGGGUGcaGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 68240 0.7 0.57342
Target:  5'- aCCGCCaagCcaUGCCCGCGcCGCGGgCGg -3'
miRNA:   3'- -GGCGGa--GaaGUGGGUGCaGCGCCgGC- -5'
24703 3' -60 NC_005264.1 + 78628 0.7 0.544666
Target:  5'- gCGCCUCUUCugUUAacCGcCGCGGCgGc -3'
miRNA:   3'- gGCGGAGAAGugGGU--GCaGCGCCGgC- -5'
24703 3' -60 NC_005264.1 + 25545 0.71 0.488733
Target:  5'- gUGCCgua-CGCCCGCGUCGCcGCCa -3'
miRNA:   3'- gGCGGagaaGUGGGUGCAGCGcCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.