miRNA display CGI


Results 61 - 80 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24703 3' -60 NC_005264.1 + 133379 0.66 0.817161
Target:  5'- aCCGCCcCccaAUCCGCGUgG-GGCCGa -3'
miRNA:   3'- -GGCGGaGaagUGGGUGCAgCgCCGGC- -5'
24703 3' -60 NC_005264.1 + 104579 0.66 0.774154
Target:  5'- gCGCCaugcCGCCCACGggaUCG-GGCCGa -3'
miRNA:   3'- gGCGGagaaGUGGGUGC---AGCgCCGGC- -5'
24703 3' -60 NC_005264.1 + 68240 0.7 0.57342
Target:  5'- aCCGCCaagCcaUGCCCGCGcCGCGGgCGg -3'
miRNA:   3'- -GGCGGa--GaaGUGGGUGCaGCGCCgGC- -5'
24703 3' -60 NC_005264.1 + 27832 0.69 0.622019
Target:  5'- -gGCCUagaUCGCgCCACuGUCGCGGCgGc -3'
miRNA:   3'- ggCGGAga-AGUG-GGUG-CAGCGCCGgC- -5'
24703 3' -60 NC_005264.1 + 67376 0.69 0.641552
Target:  5'- cCCGCgCUCgcugCGCCCGCcggCGCGGUa- -3'
miRNA:   3'- -GGCG-GAGaa--GUGGGUGca-GCGCCGgc -5'
24703 3' -60 NC_005264.1 + 66610 0.68 0.661059
Target:  5'- gCGCCgcgUUGCCgGCGccgUCGCGGCCc -3'
miRNA:   3'- gGCGGagaAGUGGgUGC---AGCGCCGGc -5'
24703 3' -60 NC_005264.1 + 119169 0.68 0.68048
Target:  5'- gCCGCCUUaaCGCCgGCGcgcaGCGcGCCGa -3'
miRNA:   3'- -GGCGGAGaaGUGGgUGCag--CGC-CGGC- -5'
24703 3' -60 NC_005264.1 + 110732 0.68 0.68048
Target:  5'- -gGCCUCcu-GCUCGCuUCGCGGCCu -3'
miRNA:   3'- ggCGGAGaagUGGGUGcAGCGCCGGc -5'
24703 3' -60 NC_005264.1 + 68044 0.68 0.690141
Target:  5'- aCCGCUUCcgUGCCCgACGagGCGGCg- -3'
miRNA:   3'- -GGCGGAGaaGUGGG-UGCagCGCCGgc -5'
24703 3' -60 NC_005264.1 + 79612 0.66 0.817161
Target:  5'- gCgGCCUagaCGCCCACG-CGCaacGGCCc -3'
miRNA:   3'- -GgCGGAgaaGUGGGUGCaGCG---CCGGc -5'
24703 3' -60 NC_005264.1 + 59088 0.66 0.808837
Target:  5'- cCCGCCUCagcaugaACCUaaGCaUgGCGGCCGc -3'
miRNA:   3'- -GGCGGAGaag----UGGG--UGcAgCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 82844 0.67 0.737625
Target:  5'- gCGCCUCcUCuuCCg---CGCGGCCGg -3'
miRNA:   3'- gGCGGAGaAGugGGugcaGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 119473 0.67 0.746903
Target:  5'- gCGUCUCg-UACCUAUG-CGCGGUCGu -3'
miRNA:   3'- gGCGGAGaaGUGGGUGCaGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 124266 0.67 0.757002
Target:  5'- gCgGCCUCggguacguuuagagCGCCgGgaggcgaGUCGCGGCCGg -3'
miRNA:   3'- -GgCGGAGaa------------GUGGgUg------CAGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 62741 0.66 0.774154
Target:  5'- aCCGCgUCgUCGCUgaGCccCGCGGCCGc -3'
miRNA:   3'- -GGCGgAGaAGUGGg-UGcaGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 158673 0.66 0.783018
Target:  5'- uCCGCUUCc-CACaCCGCGgCGUGGgCGg -3'
miRNA:   3'- -GGCGGAGaaGUG-GGUGCaGCGCCgGC- -5'
24703 3' -60 NC_005264.1 + 41975 0.66 0.799512
Target:  5'- uCCGCCcugucuaguaguuUCUUCACCUugucuuCGugcUCGuCGGCCa -3'
miRNA:   3'- -GGCGG-------------AGAAGUGGGu-----GC---AGC-GCCGGc -5'
24703 3' -60 NC_005264.1 + 20156 0.71 0.525757
Target:  5'- gCCGCCgg--CGCCCAagaUCGCGGCaCGa -3'
miRNA:   3'- -GGCGGagaaGUGGGUgc-AGCGCCG-GC- -5'
24703 3' -60 NC_005264.1 + 622 0.71 0.525757
Target:  5'- cCCGCCg----GCCCGCGUCGCaGGCa- -3'
miRNA:   3'- -GGCGGagaagUGGGUGCAGCG-CCGgc -5'
24703 3' -60 NC_005264.1 + 58693 0.67 0.737625
Target:  5'- cCCgGCCUCUaugaCGgCCGCGUUuacuaggcggGCGGCCa -3'
miRNA:   3'- -GG-CGGAGAa---GUgGGUGCAG----------CGCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.