miRNA display CGI


Results 81 - 100 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24703 3' -60 NC_005264.1 + 32026 0.69 0.631786
Target:  5'- aCCGCCUCgggCugCCcCGgagUGCGaGCCa -3'
miRNA:   3'- -GGCGGAGaa-GugGGuGCa--GCGC-CGGc -5'
24703 3' -60 NC_005264.1 + 38174 0.69 0.651313
Target:  5'- aCCGCCgcgCUguggggaCACCUAgCGUcgCGCGGCCc -3'
miRNA:   3'- -GGCGGa--GAa------GUGGGU-GCA--GCGCCGGc -5'
24703 3' -60 NC_005264.1 + 47002 0.69 0.631786
Target:  5'- cCUGCUUCUgaacagaCACCuCACGguggaaCGCGGCCu -3'
miRNA:   3'- -GGCGGAGAa------GUGG-GUGCa-----GCGCCGGc -5'
24703 3' -60 NC_005264.1 + 40933 0.66 0.800367
Target:  5'- cCCGCCgcgCcgCGCCCcgguCGaUCGCaGCCGc -3'
miRNA:   3'- -GGCGGa--GaaGUGGGu---GC-AGCGcCGGC- -5'
24703 3' -60 NC_005264.1 + 4143 0.66 0.774154
Target:  5'- gCCGCUUgucgcgaugCUUgcCGCCCACGcCGCGGUg- -3'
miRNA:   3'- -GGCGGA---------GAA--GUGGGUGCaGCGCCGgc -5'
24703 3' -60 NC_005264.1 + 4421 0.69 0.622019
Target:  5'- gUGCCccCUUCGCCgACGUCGUcaucgucugaGGCCu -3'
miRNA:   3'- gGCGGa-GAAGUGGgUGCAGCG----------CCGGc -5'
24703 3' -60 NC_005264.1 + 58693 0.67 0.737625
Target:  5'- cCCgGCCUCUaugaCGgCCGCGUUuacuaggcggGCGGCCa -3'
miRNA:   3'- -GG-CGGAGAa---GUgGGUGCAG----------CGCCGGc -5'
24703 3' -60 NC_005264.1 + 138659 0.67 0.737625
Target:  5'- gCGCCagaCUUUACCgAC--CGCGGCCGc -3'
miRNA:   3'- gGCGGa--GAAGUGGgUGcaGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 87119 0.67 0.744128
Target:  5'- -gGCCUCcggCGCCCGCGgggcgcaccagucuUCGC-GCCGa -3'
miRNA:   3'- ggCGGAGaa-GUGGGUGC--------------AGCGcCGGC- -5'
24703 3' -60 NC_005264.1 + 77932 0.67 0.746903
Target:  5'- cCUGgCUCUUCccGCCCuccCGUCcugcGCGGCCc -3'
miRNA:   3'- -GGCgGAGAAG--UGGGu--GCAG----CGCCGGc -5'
24703 3' -60 NC_005264.1 + 446 0.67 0.746903
Target:  5'- gCGUCUCg-UACCUAUG-CGCGGUCGu -3'
miRNA:   3'- gGCGGAGaaGUGGGUGCaGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 70261 0.66 0.774154
Target:  5'- cCCGCgUCggCGuaaaaCCugGUCuGCGGCUGa -3'
miRNA:   3'- -GGCGgAGaaGUg----GGugCAG-CGCCGGC- -5'
24703 3' -60 NC_005264.1 + 20156 0.71 0.525757
Target:  5'- gCCGCCgg--CGCCCAagaUCGCGGCaCGa -3'
miRNA:   3'- -GGCGGagaaGUGGGUgc-AGCGCCG-GC- -5'
24703 3' -60 NC_005264.1 + 622 0.71 0.525757
Target:  5'- cCCGCCg----GCCCGCGUCGCaGGCa- -3'
miRNA:   3'- -GGCGGagaagUGGGUGCAGCG-CCGgc -5'
24703 3' -60 NC_005264.1 + 62283 0.7 0.544666
Target:  5'- gCGCC-CUUguCCCGCGaUCuCGGCCGu -3'
miRNA:   3'- gGCGGaGAAguGGGUGC-AGcGCCGGC- -5'
24703 3' -60 NC_005264.1 + 43670 0.67 0.746903
Target:  5'- gCGCUgcg-CGCCgGCGUUaagGCGGCCGc -3'
miRNA:   3'- gGCGGagaaGUGGgUGCAG---CGCCGGC- -5'
24703 3' -60 NC_005264.1 + 134782 0.7 0.554204
Target:  5'- uUCGCUUCcgcgcgcuUUUACCCgGCGUCGCGcgcGCCGg -3'
miRNA:   3'- -GGCGGAG--------AAGUGGG-UGCAGCGC---CGGC- -5'
24703 3' -60 NC_005264.1 + 128525 0.7 0.590845
Target:  5'- gCCGCCUCgaaggcgcuauagUUCcugugACCCACGUauauuucCGCGGCgGa -3'
miRNA:   3'- -GGCGGAG-------------AAG-----UGGGUGCA-------GCGCCGgC- -5'
24703 3' -60 NC_005264.1 + 128968 0.69 0.60154
Target:  5'- gCCGCCUCgagcggaCGCuCCACGUucuucagcucugcCGCGGCgCGc -3'
miRNA:   3'- -GGCGGAGaa-----GUG-GGUGCA-------------GCGCCG-GC- -5'
24703 3' -60 NC_005264.1 + 37808 0.69 0.602513
Target:  5'- -aGCCUCccCGCCC--GUCGgGGCCGa -3'
miRNA:   3'- ggCGGAGaaGUGGGugCAGCgCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.