Results 101 - 120 of 149 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24703 | 3' | -60 | NC_005264.1 | + | 94207 | 0.69 | 0.625925 |
Target: 5'- -aGCCUCgUCGCCUaccacGCGUugcuacgaugcgcuaCGCGGCCa -3' miRNA: 3'- ggCGGAGaAGUGGG-----UGCA---------------GCGCCGGc -5' |
|||||||
24703 | 3' | -60 | NC_005264.1 | + | 4421 | 0.69 | 0.622019 |
Target: 5'- gUGCCccCUUCGCCgACGUCGUcaucgucugaGGCCu -3' miRNA: 3'- gGCGGa-GAAGUGGgUGCAGCG----------CCGGc -5' |
|||||||
24703 | 3' | -60 | NC_005264.1 | + | 20156 | 0.71 | 0.525757 |
Target: 5'- gCCGCCgg--CGCCCAagaUCGCGGCaCGa -3' miRNA: 3'- -GGCGGagaaGUGGGUgc-AGCGCCG-GC- -5' |
|||||||
24703 | 3' | -60 | NC_005264.1 | + | 622 | 0.71 | 0.525757 |
Target: 5'- cCCGCCg----GCCCGCGUCGCaGGCa- -3' miRNA: 3'- -GGCGGagaagUGGGUGCAGCG-CCGgc -5' |
|||||||
24703 | 3' | -60 | NC_005264.1 | + | 37808 | 0.69 | 0.602513 |
Target: 5'- -aGCCUCccCGCCC--GUCGgGGCCGa -3' miRNA: 3'- ggCGGAGaaGUGGGugCAGCgCCGGC- -5' |
|||||||
24703 | 3' | -60 | NC_005264.1 | + | 134782 | 0.7 | 0.554204 |
Target: 5'- uUCGCUUCcgcgcgcuUUUACCCgGCGUCGCGcgcGCCGg -3' miRNA: 3'- -GGCGGAG--------AAGUGGG-UGCAGCGC---CGGC- -5' |
|||||||
24703 | 3' | -60 | NC_005264.1 | + | 30821 | 0.68 | 0.670784 |
Target: 5'- uCCGCCUCgugcUCgaacggGCUCGCGUCGUcGUCGg -3' miRNA: 3'- -GGCGGAGa---AG------UGGGUGCAGCGcCGGC- -5' |
|||||||
24703 | 3' | -60 | NC_005264.1 | + | 46394 | 0.68 | 0.670784 |
Target: 5'- aCCGCCcCgaucgUCGCCCc---CGCGGCCa -3' miRNA: 3'- -GGCGGaGa----AGUGGGugcaGCGCCGGc -5' |
|||||||
24703 | 3' | -60 | NC_005264.1 | + | 128968 | 0.69 | 0.60154 |
Target: 5'- gCCGCCUCgagcggaCGCuCCACGUucuucagcucugcCGCGGCgCGc -3' miRNA: 3'- -GGCGGAGaa-----GUG-GGUGCA-------------GCGCCG-GC- -5' |
|||||||
24703 | 3' | -60 | NC_005264.1 | + | 43670 | 0.67 | 0.746903 |
Target: 5'- gCGCUgcg-CGCCgGCGUUaagGCGGCCGc -3' miRNA: 3'- gGCGGagaaGUGGgUGCAG---CGCCGGC- -5' |
|||||||
24703 | 3' | -60 | NC_005264.1 | + | 87119 | 0.67 | 0.744128 |
Target: 5'- -gGCCUCcggCGCCCGCGgggcgcaccagucuUCGC-GCCGa -3' miRNA: 3'- ggCGGAGaa-GUGGGUGC--------------AGCGcCGGC- -5' |
|||||||
24703 | 3' | -60 | NC_005264.1 | + | 138659 | 0.67 | 0.737625 |
Target: 5'- gCGCCagaCUUUACCgAC--CGCGGCCGc -3' miRNA: 3'- gGCGGa--GAAGUGGgUGcaGCGCCGGC- -5' |
|||||||
24703 | 3' | -60 | NC_005264.1 | + | 58693 | 0.67 | 0.737625 |
Target: 5'- cCCgGCCUCUaugaCGgCCGCGUUuacuaggcggGCGGCCa -3' miRNA: 3'- -GG-CGGAGAa---GUgGGUGCAG----------CGCCGGc -5' |
|||||||
24703 | 3' | -60 | NC_005264.1 | + | 139519 | 0.68 | 0.68048 |
Target: 5'- aCGCCUCUUCcuggagcagcaGCaugggCACGaUCGCGGCUu -3' miRNA: 3'- gGCGGAGAAG-----------UGg----GUGC-AGCGCCGGc -5' |
|||||||
24703 | 3' | -60 | NC_005264.1 | + | 4005 | 0.68 | 0.68048 |
Target: 5'- aUGCCUCcUCGCCCACcaggggcuUgGCgGGCCGa -3' miRNA: 3'- gGCGGAGaAGUGGGUGc-------AgCG-CCGGC- -5' |
|||||||
24703 | 3' | -60 | NC_005264.1 | + | 137240 | 0.68 | 0.68048 |
Target: 5'- uUCGUCUCgcCGCUCuCGUCcgGCGGCCa -3' miRNA: 3'- -GGCGGAGaaGUGGGuGCAG--CGCCGGc -5' |
|||||||
24703 | 3' | -60 | NC_005264.1 | + | 96302 | 0.68 | 0.68048 |
Target: 5'- aUCGCCga--CGCCCGCaaCGCGGUCGu -3' miRNA: 3'- -GGCGGagaaGUGGGUGcaGCGCCGGC- -5' |
|||||||
24703 | 3' | -60 | NC_005264.1 | + | 133876 | 0.68 | 0.68048 |
Target: 5'- uCCGCgCUCagagucuuggcgUUCACCCACGgcucguaCGCGGUa- -3' miRNA: 3'- -GGCG-GAG------------AAGUGGGUGCa------GCGCCGgc -5' |
|||||||
24703 | 3' | -60 | NC_005264.1 | + | 142 | 0.68 | 0.68048 |
Target: 5'- gCCGCCUUaaCGCCgGCGcgcaGCGcGCCGa -3' miRNA: 3'- -GGCGGAGaaGUGGgUGCag--CGC-CGGC- -5' |
|||||||
24703 | 3' | -60 | NC_005264.1 | + | 128021 | 0.68 | 0.68048 |
Target: 5'- -aGCCUCUgcagcaacaUCAUuagcgcuaCCGCGUCGaUGGCCGc -3' miRNA: 3'- ggCGGAGA---------AGUG--------GGUGCAGC-GCCGGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home