Results 21 - 40 of 149 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24703 | 3' | -60 | NC_005264.1 | + | 21942 | 0.67 | 0.756089 |
Target: 5'- gCCGCUUCgauggUCgauGCCCGagagugGUCGCGGCa- -3' miRNA: 3'- -GGCGGAGa----AG---UGGGUg-----CAGCGCCGgc -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 30389 | 0.67 | 0.756089 |
Target: 5'- gCGUCUCggCGgCgGCgGUCGCGcGCCGg -3' miRNA: 3'- gGCGGAGaaGUgGgUG-CAGCGC-CGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 118808 | 0.66 | 0.799512 |
Target: 5'- gCgGCCUCUaCGCCCAacggcuggacgcaUGagGCGGCUa -3' miRNA: 3'- -GgCGGAGAaGUGGGU-------------GCagCGCCGGc -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 15070 | 0.66 | 0.800367 |
Target: 5'- gCgGCCgaucgCACCUAUGUCGCGcGCUu -3' miRNA: 3'- -GgCGGagaa-GUGGGUGCAGCGC-CGGc -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 40933 | 0.66 | 0.800367 |
Target: 5'- cCCGCCgcgCcgCGCCCcgguCGaUCGCaGCCGc -3' miRNA: 3'- -GGCGGa--GaaGUGGGu---GC-AGCGcCGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 159227 | 0.66 | 0.800367 |
Target: 5'- cCCGCCcacagCGCCCAcCGUCcaccaCGGCCu -3' miRNA: 3'- -GGCGGagaa-GUGGGU-GCAGc----GCCGGc -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 104201 | 0.66 | 0.806311 |
Target: 5'- uCCGCC-CUUCAcaguaaaccguuauCCUACG-CGCaGCCa -3' miRNA: 3'- -GGCGGaGAAGU--------------GGGUGCaGCGcCGGc -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 119166 | 0.66 | 0.817161 |
Target: 5'- gCCGCCgg--CACCaaagaACGguucaGCGGCCa -3' miRNA: 3'- -GGCGGagaaGUGGg----UGCag---CGCCGGc -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 8807 | 0.66 | 0.817161 |
Target: 5'- gCGCucCUCUUCgaGCgCCGC-UCGCGGCaCGg -3' miRNA: 3'- gGCG--GAGAAG--UG-GGUGcAGCGCCG-GC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 48696 | 0.66 | 0.817161 |
Target: 5'- uCUGCUcgUCgcggUCGCUCGCGggagaugagGCGGCCGg -3' miRNA: 3'- -GGCGG--AGa---AGUGGGUGCag-------CGCCGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 157783 | 0.66 | 0.790889 |
Target: 5'- uCgGCgUCUUCccagcuaggcggcGCCCACGacgcggaaccUCGUGGCCu -3' miRNA: 3'- -GgCGgAGAAG-------------UGGGUGC----------AGCGCCGGc -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 38537 | 0.66 | 0.783018 |
Target: 5'- gCCGCCg---C-CCCGcCGUC-CGGCCGc -3' miRNA: 3'- -GGCGGagaaGuGGGU-GCAGcGCCGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 98426 | 0.67 | 0.756089 |
Target: 5'- aUCGCCg---UGCCCGCGgCGuCGGCCu -3' miRNA: 3'- -GGCGGagaaGUGGGUGCaGC-GCCGGc -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 5239 | 0.67 | 0.757002 |
Target: 5'- gCgGCCUCggguacguuuagagCGCCgGgaggcgaGUCGCGGCCGg -3' miRNA: 3'- -GgCGGAGaa------------GUGGgUg------CAGCGCCGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 33914 | 0.67 | 0.768781 |
Target: 5'- gCCGCCUU-UCugCCGCcaggcugggaaggccGUgGCGcGCCGg -3' miRNA: 3'- -GGCGGAGaAGugGGUG---------------CAgCGC-CGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 151443 | 0.66 | 0.772368 |
Target: 5'- -aGCUUCaauaucacuaaCAUCCGCGaCGCGGCCGc -3' miRNA: 3'- ggCGGAGaa---------GUGGGUGCaGCGCCGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 4143 | 0.66 | 0.774154 |
Target: 5'- gCCGCUUgucgcgaugCUUgcCGCCCACGcCGCGGUg- -3' miRNA: 3'- -GGCGGA---------GAA--GUGGGUGCaGCGCCGgc -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 30198 | 0.66 | 0.774154 |
Target: 5'- gCCGCCcCU--GCCCGCGUcccgacCGCGaucGCCGg -3' miRNA: 3'- -GGCGGaGAagUGGGUGCA------GCGC---CGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 70261 | 0.66 | 0.774154 |
Target: 5'- cCCGCgUCggCGuaaaaCCugGUCuGCGGCUGa -3' miRNA: 3'- -GGCGgAGaaGUg----GGugCAG-CGCCGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 65829 | 0.66 | 0.783018 |
Target: 5'- gCCGCCUCUUCguGCUC-CGUagcuuuaguaaaCGCGuGUCGa -3' miRNA: 3'- -GGCGGAGAAG--UGGGuGCA------------GCGC-CGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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