miRNA display CGI


Results 61 - 80 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24703 3' -60 NC_005264.1 + 58693 0.67 0.737625
Target:  5'- cCCgGCCUCUaugaCGgCCGCGUUuacuaggcggGCGGCCa -3'
miRNA:   3'- -GG-CGGAGAa---GUgGGUGCAG----------CGCCGGc -5'
24703 3' -60 NC_005264.1 + 138659 0.67 0.737625
Target:  5'- gCGCCagaCUUUACCgAC--CGCGGCCGc -3'
miRNA:   3'- gGCGGa--GAAGUGGgUGcaGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 87119 0.67 0.744128
Target:  5'- -gGCCUCcggCGCCCGCGgggcgcaccagucuUCGC-GCCGa -3'
miRNA:   3'- ggCGGAGaa-GUGGGUGC--------------AGCGcCGGC- -5'
24703 3' -60 NC_005264.1 + 43670 0.67 0.746903
Target:  5'- gCGCUgcg-CGCCgGCGUUaagGCGGCCGc -3'
miRNA:   3'- gGCGGagaaGUGGgUGCAG---CGCCGGC- -5'
24703 3' -60 NC_005264.1 + 77932 0.67 0.746903
Target:  5'- cCUGgCUCUUCccGCCCuccCGUCcugcGCGGCCc -3'
miRNA:   3'- -GGCgGAGAAG--UGGGu--GCAG----CGCCGGc -5'
24703 3' -60 NC_005264.1 + 30389 0.67 0.756089
Target:  5'- gCGUCUCggCGgCgGCgGUCGCGcGCCGg -3'
miRNA:   3'- gGCGGAGaaGUgGgUG-CAGCGC-CGGC- -5'
24703 3' -60 NC_005264.1 + 21942 0.67 0.756089
Target:  5'- gCCGCUUCgauggUCgauGCCCGagagugGUCGCGGCa- -3'
miRNA:   3'- -GGCGGAGa----AG---UGGGUg-----CAGCGCCGgc -5'
24703 3' -60 NC_005264.1 + 7529 0.67 0.756089
Target:  5'- uCCGcCCUCUccUCGCCUACGcaCGaggaCGGCCu -3'
miRNA:   3'- -GGC-GGAGA--AGUGGGUGCa-GC----GCCGGc -5'
24703 3' -60 NC_005264.1 + 35813 0.67 0.756089
Target:  5'- gCGCCUCUgccggC-CCCGCaaUgGCGGCCc -3'
miRNA:   3'- gGCGGAGAa----GuGGGUGc-AgCGCCGGc -5'
24703 3' -60 NC_005264.1 + 37166 0.67 0.746903
Target:  5'- uCUGCCggagCUUCcggacauguGCCCcCG-CGUGGCCGu -3'
miRNA:   3'- -GGCGGa---GAAG---------UGGGuGCaGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 20236 0.67 0.746903
Target:  5'- -aGCC-CggcgUGgCCAuCGUCGCGGCCGg -3'
miRNA:   3'- ggCGGaGaa--GUgGGU-GCAGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 446 0.67 0.746903
Target:  5'- gCGUCUCg-UACCUAUG-CGCGGUCGu -3'
miRNA:   3'- gGCGGAGaaGUGGGUGCaGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 25545 0.71 0.488733
Target:  5'- gUGCCgua-CGCCCGCGUCGCcGCCa -3'
miRNA:   3'- gGCGGagaaGUGGGUGCAGCGcCGGc -5'
24703 3' -60 NC_005264.1 + 88584 0.72 0.461786
Target:  5'- cCCGCCUCUacCGCCguguCugGagCGCGGCCa -3'
miRNA:   3'- -GGCGGAGAa-GUGG----GugCa-GCGCCGGc -5'
24703 3' -60 NC_005264.1 + 122552 0.72 0.452978
Target:  5'- uCCGCCUCgUCgaaCCGCGaCGCGGCgGc -3'
miRNA:   3'- -GGCGGAGaAGug-GGUGCaGCGCCGgC- -5'
24703 3' -60 NC_005264.1 + 84836 0.73 0.427119
Target:  5'- aUCGaCgUgaUCGCCCGCGaUCGCGGCCu -3'
miRNA:   3'- -GGC-GgAgaAGUGGGUGC-AGCGCCGGc -5'
24703 3' -60 NC_005264.1 + 125263 0.73 0.418695
Target:  5'- gCCGCCgcgagaCUUgcCGCCUcCGUCGCGGUCGu -3'
miRNA:   3'- -GGCGGa-----GAA--GUGGGuGCAGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 34618 0.73 0.418695
Target:  5'- aCCGUUUgUUCaagGCCCGCGggguguUCGCGGCCa -3'
miRNA:   3'- -GGCGGAgAAG---UGGGUGC------AGCGCCGGc -5'
24703 3' -60 NC_005264.1 + 19862 0.73 0.386036
Target:  5'- cCCGCCUCau-GCCCGagagacCGcCGCGGCCGc -3'
miRNA:   3'- -GGCGGAGaagUGGGU------GCaGCGCCGGC- -5'
24703 3' -60 NC_005264.1 + 146555 0.66 0.817161
Target:  5'- cCCaGCCUCUaCAUCCugGUCGUGaagaUCGa -3'
miRNA:   3'- -GG-CGGAGAaGUGGGugCAGCGCc---GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.