Results 81 - 100 of 149 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24703 | 3' | -60 | NC_005264.1 | + | 66610 | 0.68 | 0.661059 |
Target: 5'- gCGCCgcgUUGCCgGCGccgUCGCGGCCc -3' miRNA: 3'- gGCGGagaAGUGGgUGC---AGCGCCGGc -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 4059 | 0.68 | 0.670784 |
Target: 5'- uCCuCCUCUUCGUCUAUGUCGCagggaGGCCc -3' miRNA: 3'- -GGcGGAGAAGUGGGUGCAGCG-----CCGGc -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 51078 | 0.68 | 0.670784 |
Target: 5'- gCCGCCUag--ACCUGCuUCGCGGUCGc -3' miRNA: 3'- -GGCGGAgaagUGGGUGcAGCGCCGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 149847 | 0.68 | 0.670784 |
Target: 5'- uCCGCCUCgugcUCgaacggGCUCGCGUCGUcGUCGg -3' miRNA: 3'- -GGCGGAGa---AG------UGGGUGCAGCGcCGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 71826 | 0.68 | 0.670784 |
Target: 5'- gCCGCCcgCggggUCGCgaauaacgaCGCGUCGCGGCgGc -3' miRNA: 3'- -GGCGGa-Ga---AGUGg--------GUGCAGCGCCGgC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 156834 | 0.69 | 0.602513 |
Target: 5'- -aGCCUCccCGCCC--GUCGgGGCCGa -3' miRNA: 3'- ggCGGAGaaGUGGGugCAGCgCCGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 68240 | 0.7 | 0.57342 |
Target: 5'- aCCGCCaagCcaUGCCCGCGcCGCGGgCGg -3' miRNA: 3'- -GGCGGa--GaaGUGGGUGCaGCGCCgGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 146168 | 0.7 | 0.56379 |
Target: 5'- aUGCCUCg-CAUgCACGUCGCguGGCCu -3' miRNA: 3'- gGCGGAGaaGUGgGUGCAGCG--CCGGc -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 19862 | 0.73 | 0.386036 |
Target: 5'- cCCGCCUCau-GCCCGagagacCGcCGCGGCCGc -3' miRNA: 3'- -GGCGGAGaagUGGGU------GCaGCGCCGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 34618 | 0.73 | 0.418695 |
Target: 5'- aCCGUUUgUUCaagGCCCGCGggguguUCGCGGCCa -3' miRNA: 3'- -GGCGGAgAAG---UGGGUGC------AGCGCCGGc -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 125263 | 0.73 | 0.418695 |
Target: 5'- gCCGCCgcgagaCUUgcCGCCUcCGUCGCGGUCGu -3' miRNA: 3'- -GGCGGa-----GAA--GUGGGuGCAGCGCCGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 84836 | 0.73 | 0.427119 |
Target: 5'- aUCGaCgUgaUCGCCCGCGaUCGCGGCCu -3' miRNA: 3'- -GGC-GgAgaAGUGGGUGC-AGCGCCGGc -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 122552 | 0.72 | 0.452978 |
Target: 5'- uCCGCCUCgUCgaaCCGCGaCGCGGCgGc -3' miRNA: 3'- -GGCGGAGaAGug-GGUGCaGCGCCGgC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 88584 | 0.72 | 0.461786 |
Target: 5'- cCCGCCUCUacCGCCguguCugGagCGCGGCCa -3' miRNA: 3'- -GGCGGAGAa-GUGG----GugCa-GCGCCGGc -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 25545 | 0.71 | 0.488733 |
Target: 5'- gUGCCgua-CGCCCGCGUCGCcGCCa -3' miRNA: 3'- gGCGGagaaGUGGGUGCAGCGcCGGc -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 117682 | 0.71 | 0.516395 |
Target: 5'- gCCGCgCUCUcCugCCuccGCGUCGUGGCg- -3' miRNA: 3'- -GGCG-GAGAaGugGG---UGCAGCGCCGgc -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 119649 | 0.71 | 0.525757 |
Target: 5'- cCCGCCg----GCCCGCGUCGCaGGCa- -3' miRNA: 3'- -GGCGGagaagUGGGUGCAGCG-CCGgc -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 88014 | 0.71 | 0.535182 |
Target: 5'- cCUGCCcCUggUGCCCACGuuccUCGgGGCCGa -3' miRNA: 3'- -GGCGGaGAa-GUGGGUGC----AGCgCCGGC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 78628 | 0.7 | 0.544666 |
Target: 5'- gCGCCUCUUCugUUAacCGcCGCGGCgGc -3' miRNA: 3'- gGCGGAGAAGugGGU--GCaGCGCCGgC- -5' |
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24703 | 3' | -60 | NC_005264.1 | + | 88507 | 0.7 | 0.554204 |
Target: 5'- aUCGCCUCUgagaUCACCgACGacgacUCGuUGGCCa -3' miRNA: 3'- -GGCGGAGA----AGUGGgUGC-----AGC-GCCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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