miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24703 5' -54.8 NC_005264.1 + 39489 0.66 0.959184
Target:  5'- cCAgGGGCaGGCcugcgcugugGUGGACgccAGGGACGAUa -3'
miRNA:   3'- -GUgCCCG-CCG----------CAUUUG---UCCCUGUUGc -5'
24703 5' -54.8 NC_005264.1 + 59753 0.66 0.959184
Target:  5'- --gGGGCGGCGgcugcGACGcGGACGcuucGCGg -3'
miRNA:   3'- gugCCCGCCGCau---UUGUcCCUGU----UGC- -5'
24703 5' -54.8 NC_005264.1 + 158516 0.66 0.959184
Target:  5'- cCAgGGGCaGGCcugcgcugugGUGGACgccAGGGACGAUa -3'
miRNA:   3'- -GUgCCCG-CCG----------CAUUUG---UCCCUGUUGc -5'
24703 5' -54.8 NC_005264.1 + 1664 0.66 0.95882
Target:  5'- aCAUGGGCGaCGgugGGGCAaaguauuGGGGCGGCc -3'
miRNA:   3'- -GUGCCCGCcGCa--UUUGU-------CCCUGUUGc -5'
24703 5' -54.8 NC_005264.1 + 132914 0.66 0.95882
Target:  5'- gGCGcaGCGGCGUAccucccuagcgccGACGGGG-UAGCGc -3'
miRNA:   3'- gUGCc-CGCCGCAU-------------UUGUCCCuGUUGC- -5'
24703 5' -54.8 NC_005264.1 + 35531 0.66 0.955448
Target:  5'- gGCGcGGCgaaaccuauagGGCGUAGuggggcacuGCGGGGAUAAUa -3'
miRNA:   3'- gUGC-CCG-----------CCGCAUU---------UGUCCCUGUUGc -5'
24703 5' -54.8 NC_005264.1 + 110148 0.66 0.953891
Target:  5'- gGCGGGCGGCG-AAACccgccgcggcuuuGGGGCc--- -3'
miRNA:   3'- gUGCCCGCCGCaUUUGu------------CCCUGuugc -5'
24703 5' -54.8 NC_005264.1 + 15473 0.66 0.951487
Target:  5'- aCGCGaaaGCGGCGaucGCGGcGGGCAugGg -3'
miRNA:   3'- -GUGCc--CGCCGCauuUGUC-CCUGUugC- -5'
24703 5' -54.8 NC_005264.1 + 16452 0.66 0.951487
Target:  5'- cCGCGGGUGugaaCGUGGucgaaccagcGCugGGGGGCGACGa -3'
miRNA:   3'- -GUGCCCGCc---GCAUU----------UG--UCCCUGUUGC- -5'
24703 5' -54.8 NC_005264.1 + 157361 0.66 0.947297
Target:  5'- gGCGGGCccuGGcCGUGAuGCuGGG-CGGCGg -3'
miRNA:   3'- gUGCCCG---CC-GCAUU-UGuCCCuGUUGC- -5'
24703 5' -54.8 NC_005264.1 + 127018 0.66 0.947297
Target:  5'- gCACGGGCcGCcauuGCGGGGcCGGCa -3'
miRNA:   3'- -GUGCCCGcCGcauuUGUCCCuGUUGc -5'
24703 5' -54.8 NC_005264.1 + 38334 0.66 0.947297
Target:  5'- gGCGGGCccuGGcCGUGAuGCuGGG-CGGCGg -3'
miRNA:   3'- gUGCCCG---CC-GCAUU-UGuCCCuGUUGC- -5'
24703 5' -54.8 NC_005264.1 + 7991 0.66 0.947297
Target:  5'- gCACGGGCcGCcauuGCGGGGcCGGCa -3'
miRNA:   3'- -GUGCCCGcCGcauuUGUCCCuGUUGc -5'
24703 5' -54.8 NC_005264.1 + 155840 0.66 0.947297
Target:  5'- uCACGuuGGCGcCGcccGCAGGGACAACc -3'
miRNA:   3'- -GUGC--CCGCcGCauuUGUCCCUGUUGc -5'
24703 5' -54.8 NC_005264.1 + 125494 0.66 0.942874
Target:  5'- gGCGGcGCGGCGaacguCGGGGugcGCGGCc -3'
miRNA:   3'- gUGCC-CGCCGCauuu-GUCCC---UGUUGc -5'
24703 5' -54.8 NC_005264.1 + 6467 0.66 0.942874
Target:  5'- gGCGGcGCGGCGaacguCGGGGugcGCGGCc -3'
miRNA:   3'- gUGCC-CGCCGCauuu-GUCCC---UGUUGc -5'
24703 5' -54.8 NC_005264.1 + 97791 0.66 0.942874
Target:  5'- gGCGGcGCGGCGUAAugAGuaGGCuGCc -3'
miRNA:   3'- gUGCC-CGCCGCAUUugUCc-CUGuUGc -5'
24703 5' -54.8 NC_005264.1 + 81889 0.66 0.942874
Target:  5'- gGCGccuuGGCGGCGaUGGGCGGGcGAgcCAGCa -3'
miRNA:   3'- gUGC----CCGCCGC-AUUUGUCC-CU--GUUGc -5'
24703 5' -54.8 NC_005264.1 + 153506 0.66 0.938217
Target:  5'- aAC-GGCGGCcgccccuGGCGGGGACgAACGg -3'
miRNA:   3'- gUGcCCGCCGcau----UUGUCCCUG-UUGC- -5'
24703 5' -54.8 NC_005264.1 + 31185 0.66 0.938217
Target:  5'- --aGGGCGaGCGagugGGACGgGGGGCuGCGg -3'
miRNA:   3'- gugCCCGC-CGCa---UUUGU-CCCUGuUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.