miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24703 5' -54.8 NC_005264.1 + 127111 1.09 0.004312
Target:  5'- gCACGGGCGGCGUAAACAGGGACAACGa -3'
miRNA:   3'- -GUGCCCGCCGCAUUUGUCCCUGUUGC- -5'
24703 5' -54.8 NC_005264.1 + 8084 1.09 0.004312
Target:  5'- gCACGGGCGGCGUAAACAGGGACAACGa -3'
miRNA:   3'- -GUGCCCGCCGCAUUUGUCCCUGUUGC- -5'
24703 5' -54.8 NC_005264.1 + 155267 0.81 0.267031
Target:  5'- aGCGGcGCGGgGUAGgcgGCGGGGACGAUGa -3'
miRNA:   3'- gUGCC-CGCCgCAUU---UGUCCCUGUUGC- -5'
24703 5' -54.8 NC_005264.1 + 123115 0.79 0.359597
Target:  5'- gCACGGGCGGCGUcgcggcacGACGGGGcCGAgGg -3'
miRNA:   3'- -GUGCCCGCCGCAu-------UUGUCCCuGUUgC- -5'
24703 5' -54.8 NC_005264.1 + 4088 0.79 0.359597
Target:  5'- gCACGGGCGGCGUcgcggcacGACGGGGcCGAgGg -3'
miRNA:   3'- -GUGCCCGCCGCAu-------UUGUCCCuGUUgC- -5'
24703 5' -54.8 NC_005264.1 + 109603 0.78 0.37324
Target:  5'- cCGCGGGgcacggaaagcaaaUGGCGUGGGCGGGGggcGCGACGg -3'
miRNA:   3'- -GUGCCC--------------GCCGCAUUUGUCCC---UGUUGC- -5'
24703 5' -54.8 NC_005264.1 + 56920 0.77 0.425891
Target:  5'- --gGGGCGGCGUAcgugcguGGCGcacGGGGCGACGg -3'
miRNA:   3'- gugCCCGCCGCAU-------UUGU---CCCUGUUGC- -5'
24703 5' -54.8 NC_005264.1 + 43201 0.77 0.453819
Target:  5'- aCGCGGGcCGGCGggggGGGgGGGGGCuACGg -3'
miRNA:   3'- -GUGCCC-GCCGCa---UUUgUCCCUGuUGC- -5'
24703 5' -54.8 NC_005264.1 + 162228 0.77 0.453819
Target:  5'- aCGCGGGcCGGCGggggGGGgGGGGGCuACGg -3'
miRNA:   3'- -GUGCCC-GCCGCa---UUUgUCCCUGuUGC- -5'
24703 5' -54.8 NC_005264.1 + 159399 0.76 0.491267
Target:  5'- cCACGGGCGGCGgaccccugaGAAguGGGGCG-CGc -3'
miRNA:   3'- -GUGCCCGCCGCa--------UUUguCCCUGUuGC- -5'
24703 5' -54.8 NC_005264.1 + 37088 0.75 0.510522
Target:  5'- gACGcGGCGGCaGUuc-CGGGGACGGCGc -3'
miRNA:   3'- gUGC-CCGCCG-CAuuuGUCCCUGUUGC- -5'
24703 5' -54.8 NC_005264.1 + 116429 0.74 0.590193
Target:  5'- uCGCuGGgGGCGUcuggccGCGGGGGCGACGa -3'
miRNA:   3'- -GUGcCCgCCGCAuu----UGUCCCUGUUGC- -5'
24703 5' -54.8 NC_005264.1 + 20911 0.74 0.590193
Target:  5'- -uCGGGCGGCccaGUAAuuGCAGGGACcAUGu -3'
miRNA:   3'- guGCCCGCCG---CAUU--UGUCCCUGuUGC- -5'
24703 5' -54.8 NC_005264.1 + 13598 0.73 0.617681
Target:  5'- gACGGGacCGGCGaUcgcggucgggacgcGGGCAGGGGCGGCGg -3'
miRNA:   3'- gUGCCC--GCCGC-A--------------UUUGUCCCUGUUGC- -5'
24703 5' -54.8 NC_005264.1 + 132625 0.73 0.617681
Target:  5'- gACGGGacCGGCGaUcgcggucgggacgcGGGCAGGGGCGGCGg -3'
miRNA:   3'- gUGCCC--GCCGC-A--------------UUUGUCCCUGUUGC- -5'
24703 5' -54.8 NC_005264.1 + 48400 0.73 0.620743
Target:  5'- -uCGGGCGGCGgccagGAGCGGGuGGgGGCa -3'
miRNA:   3'- guGCCCGCCGCa----UUUGUCC-CUgUUGc -5'
24703 5' -54.8 NC_005264.1 + 121916 0.73 0.630953
Target:  5'- gCGCGGcGCGGCGggga-GGGcGACGGCGa -3'
miRNA:   3'- -GUGCC-CGCCGCauuugUCC-CUGUUGC- -5'
24703 5' -54.8 NC_005264.1 + 2890 0.73 0.630953
Target:  5'- gCGCGGcGCGGCGggga-GGGcGACGGCGa -3'
miRNA:   3'- -GUGCC-CGCCGCauuugUCC-CUGUUGC- -5'
24703 5' -54.8 NC_005264.1 + 160651 0.73 0.630953
Target:  5'- gCAUGGGCGcCGgcAAUggAGGGGCAACGc -3'
miRNA:   3'- -GUGCCCGCcGCauUUG--UCCCUGUUGC- -5'
24703 5' -54.8 NC_005264.1 + 77767 0.73 0.651369
Target:  5'- aACGGuGCGGCGgaccugggGAACGGGGcaggccuuguaGCGACGu -3'
miRNA:   3'- gUGCC-CGCCGCa-------UUUGUCCC-----------UGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.