miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24703 5' -54.8 NC_005264.1 + 151885 0.73 0.66054
Target:  5'- uCGCGGGCaucagcuguauguGGCGga---GGGGACGGCGg -3'
miRNA:   3'- -GUGCCCG-------------CCGCauuugUCCCUGUUGC- -5'
24703 5' -54.8 NC_005264.1 + 86973 0.72 0.701992
Target:  5'- gACGGGgGGCGUAAGCgcgccuucaAGGGGCc--- -3'
miRNA:   3'- gUGCCCgCCGCAUUUG---------UCCCUGuugc -5'
24703 5' -54.8 NC_005264.1 + 139745 0.72 0.701992
Target:  5'- gGCGGGCGGC--AGACAacgcGGGACAugccgGCGu -3'
miRNA:   3'- gUGCCCGCCGcaUUUGU----CCCUGU-----UGC- -5'
24703 5' -54.8 NC_005264.1 + 66699 0.72 0.721893
Target:  5'- gGCGGGgGGCGUAcuacgugucGcCGGGGAgCAACa -3'
miRNA:   3'- gUGCCCgCCGCAU---------UuGUCCCU-GUUGc -5'
24703 5' -54.8 NC_005264.1 + 72979 0.72 0.721893
Target:  5'- uUugGGGCaGCcuaUAGACAGGGACAccGCa -3'
miRNA:   3'- -GugCCCGcCGc--AUUUGUCCCUGU--UGc -5'
24703 5' -54.8 NC_005264.1 + 133546 0.71 0.730753
Target:  5'- aACGGGCGGCGUGAGguacCGGcucccGGACAccucgauACGg -3'
miRNA:   3'- gUGCCCGCCGCAUUU----GUC-----CCUGU-------UGC- -5'
24703 5' -54.8 NC_005264.1 + 72024 0.71 0.760701
Target:  5'- uCACGaGCGGUGacgcGAACAGGGucuACAGCGg -3'
miRNA:   3'- -GUGCcCGCCGCa---UUUGUCCC---UGUUGC- -5'
24703 5' -54.8 NC_005264.1 + 58722 0.7 0.779461
Target:  5'- gGCGGGCGGCcaccAgGGGGACGuCGc -3'
miRNA:   3'- gUGCCCGCCGcauuUgUCCCUGUuGC- -5'
24703 5' -54.8 NC_005264.1 + 5287 0.7 0.779461
Target:  5'- gGCgGGGCGGCGgcuGACccguGGGGCgGGCGa -3'
miRNA:   3'- gUG-CCCGCCGCau-UUGu---CCCUG-UUGC- -5'
24703 5' -54.8 NC_005264.1 + 6014 0.7 0.779461
Target:  5'- gACGGGCGGgG-AGGCuccGGGGAaaacCAACGg -3'
miRNA:   3'- gUGCCCGCCgCaUUUG---UCCCU----GUUGC- -5'
24703 5' -54.8 NC_005264.1 + 16566 0.7 0.779461
Target:  5'- -gUGGGCGGCGcc----GGGGCGGCGg -3'
miRNA:   3'- guGCCCGCCGCauuuguCCCUGUUGC- -5'
24703 5' -54.8 NC_005264.1 + 124314 0.7 0.779461
Target:  5'- gGCgGGGCGGCGgcuGACccguGGGGCgGGCGa -3'
miRNA:   3'- gUG-CCCGCCGCau-UUGu---CCCUG-UUGC- -5'
24703 5' -54.8 NC_005264.1 + 125041 0.7 0.779461
Target:  5'- gACGGGCGGgG-AGGCuccGGGGAaaacCAACGg -3'
miRNA:   3'- gUGCCCGCCgCaUUUG---UCCCU----GUUGC- -5'
24703 5' -54.8 NC_005264.1 + 86779 0.7 0.788649
Target:  5'- uCGCGGcgucGCGGCGUcucugcAACGGGGACAu-- -3'
miRNA:   3'- -GUGCC----CGCCGCAu-----UUGUCCCUGUugc -5'
24703 5' -54.8 NC_005264.1 + 105653 0.7 0.815335
Target:  5'- gCACGGGCGGCGcUuuGCcGGcGGCAGa- -3'
miRNA:   3'- -GUGCCCGCCGC-AuuUGuCC-CUGUUgc -5'
24703 5' -54.8 NC_005264.1 + 132771 0.7 0.815335
Target:  5'- gGCGcGGCGGCGccGACgAGGGGCuaauuAACGu -3'
miRNA:   3'- gUGC-CCGCCGCauUUG-UCCCUG-----UUGC- -5'
24703 5' -54.8 NC_005264.1 + 145745 0.69 0.82981
Target:  5'- uGCGGgguuuguuuGCGGCGgugcgcauucguccuAACAGGGAUGGCGg -3'
miRNA:   3'- gUGCC---------CGCCGCau-------------UUGUCCCUGUUGC- -5'
24703 5' -54.8 NC_005264.1 + 28159 0.69 0.832312
Target:  5'- uGCGGGCGGCucuUGAACGGcaGACAgACGg -3'
miRNA:   3'- gUGCCCGCCGc--AUUUGUCc-CUGU-UGC- -5'
24703 5' -54.8 NC_005264.1 + 68059 0.69 0.832312
Target:  5'- gACGaGGCGGCGaGAuCGGGGAacuuuGCGa -3'
miRNA:   3'- gUGC-CCGCCGCaUUuGUCCCUgu---UGC- -5'
24703 5' -54.8 NC_005264.1 + 13449 0.69 0.835622
Target:  5'- gACGcGGCGGCGccgaagGGGCuccugcggggacucgGGGGACAGCu -3'
miRNA:   3'- gUGC-CCGCCGCa-----UUUG---------------UCCCUGUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.