miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24703 5' -54.8 NC_005264.1 + 95338 0.66 0.938217
Target:  5'- -cCGGGCGccGCG-AAACGgacucggcGGGGCGGCGg -3'
miRNA:   3'- guGCCCGC--CGCaUUUGU--------CCCUGUUGC- -5'
24703 5' -54.8 NC_005264.1 + 153506 0.66 0.938217
Target:  5'- aAC-GGCGGCcgccccuGGCGGGGACgAACGg -3'
miRNA:   3'- gUGcCCGCCGcau----UUGUCCCUG-UUGC- -5'
24703 5' -54.8 NC_005264.1 + 126204 0.67 0.933324
Target:  5'- gCACGGGuCGGguuccccguCGUuguCuGGGACAACGc -3'
miRNA:   3'- -GUGCCC-GCC---------GCAuuuGuCCCUGUUGC- -5'
24703 5' -54.8 NC_005264.1 + 7177 0.67 0.933324
Target:  5'- gCACGGGuCGGguuccccguCGUuguCuGGGACAACGc -3'
miRNA:   3'- -GUGCCC-GCC---------GCAuuuGuCCCUGUUGC- -5'
24703 5' -54.8 NC_005264.1 + 101898 0.67 0.932317
Target:  5'- aCAC-GGCGGagaacacuacAAACAGGGugGACGg -3'
miRNA:   3'- -GUGcCCGCCgca-------UUUGUCCCugUUGC- -5'
24703 5' -54.8 NC_005264.1 + 100072 0.67 0.928193
Target:  5'- uGCGGGgccuagGGCGUAGcauggcggccGCGGGGcucaGCGACGa -3'
miRNA:   3'- gUGCCCg-----CCGCAUU----------UGUCCC----UGUUGC- -5'
24703 5' -54.8 NC_005264.1 + 79885 0.67 0.928193
Target:  5'- gGCGcGGCGGCGaccgucGCAGGcGACGucGCa -3'
miRNA:   3'- gUGC-CCGCCGCauu---UGUCC-CUGU--UGc -5'
24703 5' -54.8 NC_005264.1 + 43147 0.67 0.928193
Target:  5'- gCACGGGUGgaGCGgggAGGgGGGGGC-GCGu -3'
miRNA:   3'- -GUGCCCGC--CGCa--UUUgUCCCUGuUGC- -5'
24703 5' -54.8 NC_005264.1 + 84894 0.67 0.928193
Target:  5'- aGCGGGCcGCGcaGGAC-GGGAgGGCGg -3'
miRNA:   3'- gUGCCCGcCGCa-UUUGuCCCUgUUGC- -5'
24703 5' -54.8 NC_005264.1 + 611 0.67 0.928193
Target:  5'- gGCGacuacGGUGGCGUucGCuGGaGGCGACGa -3'
miRNA:   3'- gUGC-----CCGCCGCAuuUGuCC-CUGUUGC- -5'
24703 5' -54.8 NC_005264.1 + 7004 0.67 0.928193
Target:  5'- uGCGGGCGGCGccAACgugaaaguuauuGGGGuCuGCGu -3'
miRNA:   3'- gUGCCCGCCGCauUUG------------UCCCuGuUGC- -5'
24703 5' -54.8 NC_005264.1 + 162174 0.67 0.928193
Target:  5'- gCACGGGUGgaGCGgggAGGgGGGGGC-GCGu -3'
miRNA:   3'- -GUGCCCGC--CGCa--UUUgUCCCUGuUGC- -5'
24703 5' -54.8 NC_005264.1 + 22760 0.67 0.928193
Target:  5'- aGCGauaGCGGCGggcAAugAGGGGCGcgGCGa -3'
miRNA:   3'- gUGCc--CGCCGCa--UUugUCCCUGU--UGC- -5'
24703 5' -54.8 NC_005264.1 + 23974 0.67 0.922824
Target:  5'- -gUGGGUGGUGUAGugggaaGGGGAgGugGa -3'
miRNA:   3'- guGCCCGCCGCAUUug----UCCCUgUugC- -5'
24703 5' -54.8 NC_005264.1 + 3647 0.67 0.922824
Target:  5'- uCugGgaGGCGGUuUGAGCuGGGGGCGACu -3'
miRNA:   3'- -GugC--CCGCCGcAUUUG-UCCCUGUUGc -5'
24703 5' -54.8 NC_005264.1 + 131574 0.67 0.922824
Target:  5'- aGCGGGgGGCGUucgccgcgaAGAUaccgcugaggGGGGACA-CGg -3'
miRNA:   3'- gUGCCCgCCGCA---------UUUG----------UCCCUGUuGC- -5'
24703 5' -54.8 NC_005264.1 + 12547 0.67 0.922824
Target:  5'- aGCGGGgGGCGUucgccgcgaAGAUaccgcugaggGGGGACA-CGg -3'
miRNA:   3'- gUGCCCgCCGCA---------UUUG----------UCCCUGUuGC- -5'
24703 5' -54.8 NC_005264.1 + 148248 0.67 0.917217
Target:  5'- aCGCGuucgcGGCGGCGUuu-CAcGGGACAGa- -3'
miRNA:   3'- -GUGC-----CCGCCGCAuuuGU-CCCUGUUgc -5'
24703 5' -54.8 NC_005264.1 + 67019 0.67 0.917217
Target:  5'- gACGGaGCGGCGgccuugcGCAGGcccccgacguaaGGCGGCGg -3'
miRNA:   3'- gUGCC-CGCCGCauu----UGUCC------------CUGUUGC- -5'
24703 5' -54.8 NC_005264.1 + 43993 0.67 0.917217
Target:  5'- aCGCGaGGCGGaCuUGGGCAGGGuCGAgGu -3'
miRNA:   3'- -GUGC-CCGCC-GcAUUUGUCCCuGUUgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.