miRNA display CGI


Results 41 - 60 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24703 5' -54.8 NC_005264.1 + 56450 0.67 0.911373
Target:  5'- gACGuaGGCGGCGUAcaGACAcGGGuAgAACGc -3'
miRNA:   3'- gUGC--CCGCCGCAU--UUGU-CCC-UgUUGC- -5'
24703 5' -54.8 NC_005264.1 + 151537 0.67 0.911373
Target:  5'- uCAUGGGCGGCGUGGACGcccuacccuGGcGCGu-- -3'
miRNA:   3'- -GUGCCCGCCGCAUUUGU---------CCcUGUugc -5'
24703 5' -54.8 NC_005264.1 + 106512 0.67 0.911373
Target:  5'- aACGaGGCGGUGcgcGACGGcGGCAGCGc -3'
miRNA:   3'- gUGC-CCGCCGCau-UUGUCcCUGUUGC- -5'
24703 5' -54.8 NC_005264.1 + 79438 0.68 0.905294
Target:  5'- gGCGGuGCGGgGUcucCGGGGGCAGa- -3'
miRNA:   3'- gUGCC-CGCCgCAuuuGUCCCUGUUgc -5'
24703 5' -54.8 NC_005264.1 + 3620 0.68 0.905294
Target:  5'- -gUGGGCGcUGUGGGCGGGGugGGgGu -3'
miRNA:   3'- guGCCCGCcGCAUUUGUCCCugUUgC- -5'
24703 5' -54.8 NC_005264.1 + 25921 0.68 0.892438
Target:  5'- gGCGGGgGGCGcuguAGCGGacgaGGCGACGa -3'
miRNA:   3'- gUGCCCgCCGCau--UUGUCc---CUGUUGC- -5'
24703 5' -54.8 NC_005264.1 + 97527 0.68 0.892438
Target:  5'- cCGCGGcuGUGGCGU-GGCAGcGGGCAAg- -3'
miRNA:   3'- -GUGCC--CGCCGCAuUUGUC-CCUGUUgc -5'
24703 5' -54.8 NC_005264.1 + 33662 0.68 0.892438
Target:  5'- aGCGGGUGGCGgguaUGAAUcuGGGGCGGa- -3'
miRNA:   3'- gUGCCCGCCGC----AUUUGu-CCCUGUUgc -5'
24703 5' -54.8 NC_005264.1 + 122443 0.68 0.885667
Target:  5'- aCGCGuGCGGCGUAcAACAGGaACAAa- -3'
miRNA:   3'- -GUGCcCGCCGCAU-UUGUCCcUGUUgc -5'
24703 5' -54.8 NC_005264.1 + 122699 0.68 0.885667
Target:  5'- gAUGGGCGGcCGUcucggcggcgAGACgaGGaGGACGGCGa -3'
miRNA:   3'- gUGCCCGCC-GCA----------UUUG--UC-CCUGUUGC- -5'
24703 5' -54.8 NC_005264.1 + 3672 0.68 0.885667
Target:  5'- gAUGGGCGGcCGUcucggcggcgAGACgaGGaGGACGGCGa -3'
miRNA:   3'- gUGCCCGCC-GCA----------UUUG--UC-CCUGUUGC- -5'
24703 5' -54.8 NC_005264.1 + 116422 0.68 0.885667
Target:  5'- gCGCaGGGCGGCGU--GCAGccucGCGGCGg -3'
miRNA:   3'- -GUG-CCCGCCGCAuuUGUCcc--UGUUGC- -5'
24703 5' -54.8 NC_005264.1 + 109095 0.68 0.878673
Target:  5'- gACGaGGaCGGCGccggAGACGGGcACGACGa -3'
miRNA:   3'- gUGC-CC-GCCGCa---UUUGUCCcUGUUGC- -5'
24703 5' -54.8 NC_005264.1 + 85472 0.68 0.878673
Target:  5'- uUACGGGCGacGCGcUAGAC-GGGACGGa- -3'
miRNA:   3'- -GUGCCCGC--CGC-AUUUGuCCCUGUUgc -5'
24703 5' -54.8 NC_005264.1 + 53320 0.68 0.878673
Target:  5'- cCAgGGGCuGCuUGgccAGCAGGGGCAGCc -3'
miRNA:   3'- -GUgCCCGcCGcAU---UUGUCCCUGUUGc -5'
24703 5' -54.8 NC_005264.1 + 79211 0.68 0.87146
Target:  5'- cCugGGGCuaggcuGCGU--GCAGGcGGCGGCGg -3'
miRNA:   3'- -GugCCCGc-----CGCAuuUGUCC-CUGUUGC- -5'
24703 5' -54.8 NC_005264.1 + 2522 0.69 0.864034
Target:  5'- gCGCGGGgGGCGacuucccgAGACGGGGGuuGCu -3'
miRNA:   3'- -GUGCCCgCCGCa-------UUUGUCCCUguUGc -5'
24703 5' -54.8 NC_005264.1 + 28335 0.69 0.864034
Target:  5'- uGC-GGCGGCGUAcggguAGCGGGcGACAcGCGc -3'
miRNA:   3'- gUGcCCGCCGCAU-----UUGUCC-CUGU-UGC- -5'
24703 5' -54.8 NC_005264.1 + 121549 0.69 0.864034
Target:  5'- gCGCGGGgGGCGacuucccgAGACGGGGGuuGCu -3'
miRNA:   3'- -GUGCCCgCCGCa-------UUUGUCCCUguUGc -5'
24703 5' -54.8 NC_005264.1 + 114303 0.69 0.864034
Target:  5'- gACGGG-GGCGc--GC-GGGACGACGc -3'
miRNA:   3'- gUGCCCgCCGCauuUGuCCCUGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.