miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24703 5' -54.8 NC_005264.1 + 611 0.67 0.928193
Target:  5'- gGCGacuacGGUGGCGUucGCuGGaGGCGACGa -3'
miRNA:   3'- gUGC-----CCGCCGCAuuUGuCC-CUGUUGC- -5'
24703 5' -54.8 NC_005264.1 + 1664 0.66 0.95882
Target:  5'- aCAUGGGCGaCGgugGGGCAaaguauuGGGGCGGCc -3'
miRNA:   3'- -GUGCCCGCcGCa--UUUGU-------CCCUGUUGc -5'
24703 5' -54.8 NC_005264.1 + 2522 0.69 0.864034
Target:  5'- gCGCGGGgGGCGacuucccgAGACGGGGGuuGCu -3'
miRNA:   3'- -GUGCCCgCCGCa-------UUUGUCCCUguUGc -5'
24703 5' -54.8 NC_005264.1 + 2890 0.73 0.630953
Target:  5'- gCGCGGcGCGGCGggga-GGGcGACGGCGa -3'
miRNA:   3'- -GUGCC-CGCCGCauuugUCC-CUGUUGC- -5'
24703 5' -54.8 NC_005264.1 + 3620 0.68 0.905294
Target:  5'- -gUGGGCGcUGUGGGCGGGGugGGgGu -3'
miRNA:   3'- guGCCCGCcGCAUUUGUCCCugUUgC- -5'
24703 5' -54.8 NC_005264.1 + 3647 0.67 0.922824
Target:  5'- uCugGgaGGCGGUuUGAGCuGGGGGCGACu -3'
miRNA:   3'- -GugC--CCGCCGcAUUUG-UCCCUGUUGc -5'
24703 5' -54.8 NC_005264.1 + 3672 0.68 0.885667
Target:  5'- gAUGGGCGGcCGUcucggcggcgAGACgaGGaGGACGGCGa -3'
miRNA:   3'- gUGCCCGCC-GCA----------UUUG--UC-CCUGUUGC- -5'
24703 5' -54.8 NC_005264.1 + 4088 0.79 0.359597
Target:  5'- gCACGGGCGGCGUcgcggcacGACGGGGcCGAgGg -3'
miRNA:   3'- -GUGCCCGCCGCAu-------UUGUCCCuGUUgC- -5'
24703 5' -54.8 NC_005264.1 + 5287 0.7 0.779461
Target:  5'- gGCgGGGCGGCGgcuGACccguGGGGCgGGCGa -3'
miRNA:   3'- gUG-CCCGCCGCau-UUGu---CCCUG-UUGC- -5'
24703 5' -54.8 NC_005264.1 + 6014 0.7 0.779461
Target:  5'- gACGGGCGGgG-AGGCuccGGGGAaaacCAACGg -3'
miRNA:   3'- gUGCCCGCCgCaUUUG---UCCCU----GUUGC- -5'
24703 5' -54.8 NC_005264.1 + 6467 0.66 0.942874
Target:  5'- gGCGGcGCGGCGaacguCGGGGugcGCGGCc -3'
miRNA:   3'- gUGCC-CGCCGCauuu-GUCCC---UGUUGc -5'
24703 5' -54.8 NC_005264.1 + 7004 0.67 0.928193
Target:  5'- uGCGGGCGGCGccAACgugaaaguuauuGGGGuCuGCGu -3'
miRNA:   3'- gUGCCCGCCGCauUUG------------UCCCuGuUGC- -5'
24703 5' -54.8 NC_005264.1 + 7177 0.67 0.933324
Target:  5'- gCACGGGuCGGguuccccguCGUuguCuGGGACAACGc -3'
miRNA:   3'- -GUGCCC-GCC---------GCAuuuGuCCCUGUUGC- -5'
24703 5' -54.8 NC_005264.1 + 7991 0.66 0.947297
Target:  5'- gCACGGGCcGCcauuGCGGGGcCGGCa -3'
miRNA:   3'- -GUGCCCGcCGcauuUGUCCCuGUUGc -5'
24703 5' -54.8 NC_005264.1 + 8084 1.09 0.004312
Target:  5'- gCACGGGCGGCGUAAACAGGGACAACGa -3'
miRNA:   3'- -GUGCCCGCCGCAUUUGUCCCUGUUGC- -5'
24703 5' -54.8 NC_005264.1 + 12547 0.67 0.922824
Target:  5'- aGCGGGgGGCGUucgccgcgaAGAUaccgcugaggGGGGACA-CGg -3'
miRNA:   3'- gUGCCCgCCGCA---------UUUG----------UCCCUGUuGC- -5'
24703 5' -54.8 NC_005264.1 + 13449 0.69 0.835622
Target:  5'- gACGcGGCGGCGccgaagGGGCuccugcggggacucgGGGGACAGCu -3'
miRNA:   3'- gUGC-CCGCCGCa-----UUUG---------------UCCCUGUUGc -5'
24703 5' -54.8 NC_005264.1 + 13598 0.73 0.617681
Target:  5'- gACGGGacCGGCGaUcgcggucgggacgcGGGCAGGGGCGGCGg -3'
miRNA:   3'- gUGCCC--GCCGC-A--------------UUUGUCCCUGUUGC- -5'
24703 5' -54.8 NC_005264.1 + 15473 0.66 0.951487
Target:  5'- aCGCGaaaGCGGCGaucGCGGcGGGCAugGg -3'
miRNA:   3'- -GUGCc--CGCCGCauuUGUC-CCUGUugC- -5'
24703 5' -54.8 NC_005264.1 + 16452 0.66 0.951487
Target:  5'- cCGCGGGUGugaaCGUGGucgaaccagcGCugGGGGGCGACGa -3'
miRNA:   3'- -GUGCCCGCc---GCAUU----------UG--UCCCUGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.