miRNA display CGI


Results 21 - 40 of 105 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24703 5' -54.8 NC_005264.1 + 16566 0.7 0.779461
Target:  5'- -gUGGGCGGCGcc----GGGGCGGCGg -3'
miRNA:   3'- guGCCCGCCGCauuuguCCCUGUUGC- -5'
24703 5' -54.8 NC_005264.1 + 20911 0.74 0.590193
Target:  5'- -uCGGGCGGCccaGUAAuuGCAGGGACcAUGu -3'
miRNA:   3'- guGCCCGCCG---CAUU--UGUCCCUGuUGC- -5'
24703 5' -54.8 NC_005264.1 + 22760 0.67 0.928193
Target:  5'- aGCGauaGCGGCGggcAAugAGGGGCGcgGCGa -3'
miRNA:   3'- gUGCc--CGCCGCa--UUugUCCCUGU--UGC- -5'
24703 5' -54.8 NC_005264.1 + 23974 0.67 0.922824
Target:  5'- -gUGGGUGGUGUAGugggaaGGGGAgGugGa -3'
miRNA:   3'- guGCCCGCCGCAUUug----UCCCUgUugC- -5'
24703 5' -54.8 NC_005264.1 + 25921 0.68 0.892438
Target:  5'- gGCGGGgGGCGcuguAGCGGacgaGGCGACGa -3'
miRNA:   3'- gUGCCCgCCGCau--UUGUCc---CUGUUGC- -5'
24703 5' -54.8 NC_005264.1 + 28159 0.69 0.832312
Target:  5'- uGCGGGCGGCucuUGAACGGcaGACAgACGg -3'
miRNA:   3'- gUGCCCGCCGc--AUUUGUCc-CUGU-UGC- -5'
24703 5' -54.8 NC_005264.1 + 28335 0.69 0.864034
Target:  5'- uGC-GGCGGCGUAcggguAGCGGGcGACAcGCGc -3'
miRNA:   3'- gUGcCCGCCGCAU-----UUGUCC-CUGU-UGC- -5'
24703 5' -54.8 NC_005264.1 + 31185 0.66 0.938217
Target:  5'- --aGGGCGaGCGagugGGACGgGGGGCuGCGg -3'
miRNA:   3'- gugCCCGC-CGCa---UUUGU-CCCUGuUGC- -5'
24703 5' -54.8 NC_005264.1 + 33662 0.68 0.892438
Target:  5'- aGCGGGUGGCGgguaUGAAUcuGGGGCGGa- -3'
miRNA:   3'- gUGCCCGCCGC----AUUUGu-CCCUGUUgc -5'
24703 5' -54.8 NC_005264.1 + 34140 0.69 0.8564
Target:  5'- gACGGGC-GCGUAGGCuucGGGuCGugGu -3'
miRNA:   3'- gUGCCCGcCGCAUUUGu--CCCuGUugC- -5'
24703 5' -54.8 NC_005264.1 + 35531 0.66 0.955448
Target:  5'- gGCGcGGCgaaaccuauagGGCGUAGuggggcacuGCGGGGAUAAUa -3'
miRNA:   3'- gUGC-CCG-----------CCGCAUU---------UGUCCCUGUUGc -5'
24703 5' -54.8 NC_005264.1 + 37088 0.75 0.510522
Target:  5'- gACGcGGCGGCaGUuc-CGGGGACGGCGc -3'
miRNA:   3'- gUGC-CCGCCG-CAuuuGUCCCUGUUGC- -5'
24703 5' -54.8 NC_005264.1 + 38334 0.66 0.947297
Target:  5'- gGCGGGCccuGGcCGUGAuGCuGGG-CGGCGg -3'
miRNA:   3'- gUGCCCG---CC-GCAUU-UGuCCCuGUUGC- -5'
24703 5' -54.8 NC_005264.1 + 39489 0.66 0.959184
Target:  5'- cCAgGGGCaGGCcugcgcugugGUGGACgccAGGGACGAUa -3'
miRNA:   3'- -GUgCCCG-CCG----------CAUUUG---UCCCUGUUGc -5'
24703 5' -54.8 NC_005264.1 + 43147 0.67 0.928193
Target:  5'- gCACGGGUGgaGCGgggAGGgGGGGGC-GCGu -3'
miRNA:   3'- -GUGCCCGC--CGCa--UUUgUCCCUGuUGC- -5'
24703 5' -54.8 NC_005264.1 + 43201 0.77 0.453819
Target:  5'- aCGCGGGcCGGCGggggGGGgGGGGGCuACGg -3'
miRNA:   3'- -GUGCCC-GCCGCa---UUUgUCCCUGuUGC- -5'
24703 5' -54.8 NC_005264.1 + 43993 0.67 0.917217
Target:  5'- aCGCGaGGCGGaCuUGGGCAGGGuCGAgGu -3'
miRNA:   3'- -GUGC-CCGCC-GcAUUUGUCCCuGUUgC- -5'
24703 5' -54.8 NC_005264.1 + 48400 0.73 0.620743
Target:  5'- -uCGGGCGGCGgccagGAGCGGGuGGgGGCa -3'
miRNA:   3'- guGCCCGCCGCa----UUUGUCC-CUgUUGc -5'
24703 5' -54.8 NC_005264.1 + 53320 0.68 0.878673
Target:  5'- cCAgGGGCuGCuUGgccAGCAGGGGCAGCc -3'
miRNA:   3'- -GUgCCCGcCGcAU---UUGUCCCUGUUGc -5'
24703 5' -54.8 NC_005264.1 + 56450 0.67 0.911373
Target:  5'- gACGuaGGCGGCGUAcaGACAcGGGuAgAACGc -3'
miRNA:   3'- gUGC--CCGCCGCAU--UUGU-CCC-UgUUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.