miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24703 5' -54.8 NC_005264.1 + 162228 0.77 0.453819
Target:  5'- aCGCGGGcCGGCGggggGGGgGGGGGCuACGg -3'
miRNA:   3'- -GUGCCC-GCCGCa---UUUgUCCCUGuUGC- -5'
24703 5' -54.8 NC_005264.1 + 162174 0.67 0.928193
Target:  5'- gCACGGGUGgaGCGgggAGGgGGGGGC-GCGu -3'
miRNA:   3'- -GUGCCCGC--CGCa--UUUgUCCCUGuUGC- -5'
24703 5' -54.8 NC_005264.1 + 160651 0.73 0.630953
Target:  5'- gCAUGGGCGcCGgcAAUggAGGGGCAACGc -3'
miRNA:   3'- -GUGCCCGCcGCauUUG--UCCCUGUUGC- -5'
24703 5' -54.8 NC_005264.1 + 159399 0.76 0.491267
Target:  5'- cCACGGGCGGCGgaccccugaGAAguGGGGCG-CGc -3'
miRNA:   3'- -GUGCCCGCCGCa--------UUUguCCCUGUuGC- -5'
24703 5' -54.8 NC_005264.1 + 158516 0.66 0.959184
Target:  5'- cCAgGGGCaGGCcugcgcugugGUGGACgccAGGGACGAUa -3'
miRNA:   3'- -GUgCCCG-CCG----------CAUUUG---UCCCUGUUGc -5'
24703 5' -54.8 NC_005264.1 + 157361 0.66 0.947297
Target:  5'- gGCGGGCccuGGcCGUGAuGCuGGG-CGGCGg -3'
miRNA:   3'- gUGCCCG---CC-GCAUU-UGuCCCuGUUGC- -5'
24703 5' -54.8 NC_005264.1 + 155840 0.66 0.947297
Target:  5'- uCACGuuGGCGcCGcccGCAGGGACAACc -3'
miRNA:   3'- -GUGC--CCGCcGCauuUGUCCCUGUUGc -5'
24703 5' -54.8 NC_005264.1 + 155267 0.81 0.267031
Target:  5'- aGCGGcGCGGgGUAGgcgGCGGGGACGAUGa -3'
miRNA:   3'- gUGCC-CGCCgCAUU---UGUCCCUGUUGC- -5'
24703 5' -54.8 NC_005264.1 + 153506 0.66 0.938217
Target:  5'- aAC-GGCGGCcgccccuGGCGGGGACgAACGg -3'
miRNA:   3'- gUGcCCGCCGcau----UUGUCCCUG-UUGC- -5'
24703 5' -54.8 NC_005264.1 + 151885 0.73 0.66054
Target:  5'- uCGCGGGCaucagcuguauguGGCGga---GGGGACGGCGg -3'
miRNA:   3'- -GUGCCCG-------------CCGCauuugUCCCUGUUGC- -5'
24703 5' -54.8 NC_005264.1 + 151537 0.67 0.911373
Target:  5'- uCAUGGGCGGCGUGGACGcccuacccuGGcGCGu-- -3'
miRNA:   3'- -GUGCCCGCCGCAUUUGU---------CCcUGUugc -5'
24703 5' -54.8 NC_005264.1 + 150793 0.69 0.848564
Target:  5'- uUAUGGG-GGCGUGuggGGCAGGaGcGCAGCGa -3'
miRNA:   3'- -GUGCCCgCCGCAU---UUGUCC-C-UGUUGC- -5'
24703 5' -54.8 NC_005264.1 + 150212 0.66 0.938217
Target:  5'- --aGGGCGaGCGagugGGACGgGGGGCuGCGg -3'
miRNA:   3'- gugCCCGC-CGCa---UUUGU-CCCUGuUGC- -5'
24703 5' -54.8 NC_005264.1 + 148248 0.67 0.917217
Target:  5'- aCGCGuucgcGGCGGCGUuu-CAcGGGACAGa- -3'
miRNA:   3'- -GUGC-----CCGCCGCAuuuGU-CCCUGUUgc -5'
24703 5' -54.8 NC_005264.1 + 145745 0.69 0.82981
Target:  5'- uGCGGgguuuguuuGCGGCGgugcgcauucguccuAACAGGGAUGGCGg -3'
miRNA:   3'- gUGCC---------CGCCGCau-------------UUGUCCCUGUUGC- -5'
24703 5' -54.8 NC_005264.1 + 139745 0.72 0.701992
Target:  5'- gGCGGGCGGC--AGACAacgcGGGACAugccgGCGu -3'
miRNA:   3'- gUGCCCGCCGcaUUUGU----CCCUGU-----UGC- -5'
24703 5' -54.8 NC_005264.1 + 133546 0.71 0.730753
Target:  5'- aACGGGCGGCGUGAGguacCGGcucccGGACAccucgauACGg -3'
miRNA:   3'- gUGCCCGCCGCAUUU----GUC-----CCUGU-------UGC- -5'
24703 5' -54.8 NC_005264.1 + 132914 0.66 0.95882
Target:  5'- gGCGcaGCGGCGUAccucccuagcgccGACGGGG-UAGCGc -3'
miRNA:   3'- gUGCc-CGCCGCAU-------------UUGUCCCuGUUGC- -5'
24703 5' -54.8 NC_005264.1 + 132771 0.7 0.815335
Target:  5'- gGCGcGGCGGCGccGACgAGGGGCuaauuAACGu -3'
miRNA:   3'- gUGC-CCGCCGCauUUG-UCCCUG-----UUGC- -5'
24703 5' -54.8 NC_005264.1 + 132625 0.73 0.617681
Target:  5'- gACGGGacCGGCGaUcgcggucgggacgcGGGCAGGGGCGGCGg -3'
miRNA:   3'- gUGCCC--GCCGC-A--------------UUUGUCCCUGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.