miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24703 5' -54.8 NC_005264.1 + 127111 1.09 0.004312
Target:  5'- gCACGGGCGGCGUAAACAGGGACAACGa -3'
miRNA:   3'- -GUGCCCGCCGCAUUUGUCCCUGUUGC- -5'
24703 5' -54.8 NC_005264.1 + 114303 0.69 0.864034
Target:  5'- gACGGG-GGCGc--GC-GGGACGACGc -3'
miRNA:   3'- gUGCCCgCCGCauuUGuCCCUGUUGC- -5'
24703 5' -54.8 NC_005264.1 + 85472 0.68 0.878673
Target:  5'- uUACGGGCGacGCGcUAGAC-GGGACGGa- -3'
miRNA:   3'- -GUGCCCGC--CGC-AUUUGuCCCUGUUgc -5'
24703 5' -54.8 NC_005264.1 + 158516 0.66 0.959184
Target:  5'- cCAgGGGCaGGCcugcgcugugGUGGACgccAGGGACGAUa -3'
miRNA:   3'- -GUgCCCG-CCG----------CAUUUG---UCCCUGUUGc -5'
24703 5' -54.8 NC_005264.1 + 116429 0.74 0.590193
Target:  5'- uCGCuGGgGGCGUcuggccGCGGGGGCGACGa -3'
miRNA:   3'- -GUGcCCgCCGCAuu----UGUCCCUGUUGC- -5'
24703 5' -54.8 NC_005264.1 + 132625 0.73 0.617681
Target:  5'- gACGGGacCGGCGaUcgcggucgggacgcGGGCAGGGGCGGCGg -3'
miRNA:   3'- gUGCCC--GCCGC-A--------------UUUGUCCCUGUUGC- -5'
24703 5' -54.8 NC_005264.1 + 125041 0.7 0.779461
Target:  5'- gACGGGCGGgG-AGGCuccGGGGAaaacCAACGg -3'
miRNA:   3'- gUGCCCGCCgCaUUUG---UCCCU----GUUGC- -5'
24703 5' -54.8 NC_005264.1 + 124314 0.7 0.779461
Target:  5'- gGCgGGGCGGCGgcuGACccguGGGGCgGGCGa -3'
miRNA:   3'- gUG-CCCGCCGCau-UUGu---CCCUG-UUGC- -5'
24703 5' -54.8 NC_005264.1 + 68059 0.69 0.832312
Target:  5'- gACGaGGCGGCGaGAuCGGGGAacuuuGCGa -3'
miRNA:   3'- gUGC-CCGCCGCaUUuGUCCCUgu---UGC- -5'
24703 5' -54.8 NC_005264.1 + 28335 0.69 0.864034
Target:  5'- uGC-GGCGGCGUAcggguAGCGGGcGACAcGCGc -3'
miRNA:   3'- gUGcCCGCCGCAU-----UUGUCC-CUGU-UGC- -5'
24703 5' -54.8 NC_005264.1 + 34140 0.69 0.8564
Target:  5'- gACGGGC-GCGUAGGCuucGGGuCGugGu -3'
miRNA:   3'- gUGCCCGcCGCAUUUGu--CCCuGUugC- -5'
24703 5' -54.8 NC_005264.1 + 86779 0.7 0.788649
Target:  5'- uCGCGGcgucGCGGCGUcucugcAACGGGGACAu-- -3'
miRNA:   3'- -GUGCC----CGCCGCAu-----UUGUCCCUGUugc -5'
24703 5' -54.8 NC_005264.1 + 123115 0.79 0.359597
Target:  5'- gCACGGGCGGCGUcgcggcacGACGGGGcCGAgGg -3'
miRNA:   3'- -GUGCCCGCCGCAu-------UUGUCCCuGUUgC- -5'
24703 5' -54.8 NC_005264.1 + 60398 0.69 0.859478
Target:  5'- cCAC-GGCGGCGUGAAgggccaggaaccacuUGGGGACGGgGu -3'
miRNA:   3'- -GUGcCCGCCGCAUUU---------------GUCCCUGUUgC- -5'
24703 5' -54.8 NC_005264.1 + 162228 0.77 0.453819
Target:  5'- aCGCGGGcCGGCGggggGGGgGGGGGCuACGg -3'
miRNA:   3'- -GUGCCC-GCCGCa---UUUgUCCCUGuUGC- -5'
24703 5' -54.8 NC_005264.1 + 16566 0.7 0.779461
Target:  5'- -gUGGGCGGCGcc----GGGGCGGCGg -3'
miRNA:   3'- guGCCCGCCGCauuuguCCCUGUUGC- -5'
24703 5' -54.8 NC_005264.1 + 121549 0.69 0.864034
Target:  5'- gCGCGGGgGGCGacuucccgAGACGGGGGuuGCu -3'
miRNA:   3'- -GUGCCCgCCGCa-------UUUGUCCCUguUGc -5'
24703 5' -54.8 NC_005264.1 + 79211 0.68 0.87146
Target:  5'- cCugGGGCuaggcuGCGU--GCAGGcGGCGGCGg -3'
miRNA:   3'- -GugCCCGc-----CGCAuuUGUCC-CUGUUGC- -5'
24703 5' -54.8 NC_005264.1 + 37088 0.75 0.510522
Target:  5'- gACGcGGCGGCaGUuc-CGGGGACGGCGc -3'
miRNA:   3'- gUGC-CCGCCG-CAuuuGUCCCUGUUGC- -5'
24703 5' -54.8 NC_005264.1 + 121916 0.73 0.630953
Target:  5'- gCGCGGcGCGGCGggga-GGGcGACGGCGa -3'
miRNA:   3'- -GUGCC-CGCCGCauuugUCC-CUGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.