miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24703 5' -54.8 NC_005264.1 + 3620 0.68 0.905294
Target:  5'- -gUGGGCGcUGUGGGCGGGGugGGgGu -3'
miRNA:   3'- guGCCCGCcGCAUUUGUCCCugUUgC- -5'
24703 5' -54.8 NC_005264.1 + 85472 0.68 0.878673
Target:  5'- uUACGGGCGacGCGcUAGAC-GGGACGGa- -3'
miRNA:   3'- -GUGCCCGC--CGC-AUUUGuCCCUGUUgc -5'
24703 5' -54.8 NC_005264.1 + 86779 0.7 0.788649
Target:  5'- uCGCGGcgucGCGGCGUcucugcAACGGGGACAu-- -3'
miRNA:   3'- -GUGCC----CGCCGCAu-----UUGUCCCUGUugc -5'
24703 5' -54.8 NC_005264.1 + 37088 0.75 0.510522
Target:  5'- gACGcGGCGGCaGUuc-CGGGGACGGCGc -3'
miRNA:   3'- gUGC-CCGCCG-CAuuuGUCCCUGUUGC- -5'
24703 5' -54.8 NC_005264.1 + 126204 0.67 0.933324
Target:  5'- gCACGGGuCGGguuccccguCGUuguCuGGGACAACGc -3'
miRNA:   3'- -GUGCCC-GCC---------GCAuuuGuCCCUGUUGC- -5'
24703 5' -54.8 NC_005264.1 + 23974 0.67 0.922824
Target:  5'- -gUGGGUGGUGUAGugggaaGGGGAgGugGa -3'
miRNA:   3'- guGCCCGCCGCAUUug----UCCCUgUugC- -5'
24703 5' -54.8 NC_005264.1 + 114303 0.69 0.864034
Target:  5'- gACGGG-GGCGc--GC-GGGACGACGc -3'
miRNA:   3'- gUGCCCgCCGCauuUGuCCCUGUUGC- -5'
24703 5' -54.8 NC_005264.1 + 162228 0.77 0.453819
Target:  5'- aCGCGGGcCGGCGggggGGGgGGGGGCuACGg -3'
miRNA:   3'- -GUGCCC-GCCGCa---UUUgUCCCUGuUGC- -5'
24703 5' -54.8 NC_005264.1 + 3647 0.67 0.922824
Target:  5'- uCugGgaGGCGGUuUGAGCuGGGGGCGACu -3'
miRNA:   3'- -GugC--CCGCCGcAUUUG-UCCCUGUUGc -5'
24703 5' -54.8 NC_005264.1 + 123115 0.79 0.359597
Target:  5'- gCACGGGCGGCGUcgcggcacGACGGGGcCGAgGg -3'
miRNA:   3'- -GUGCCCGCCGCAu-------UUGUCCCuGUUgC- -5'
24703 5' -54.8 NC_005264.1 + 79211 0.68 0.87146
Target:  5'- cCugGGGCuaggcuGCGU--GCAGGcGGCGGCGg -3'
miRNA:   3'- -GugCCCGc-----CGCAuuUGUCC-CUGUUGC- -5'
24703 5' -54.8 NC_005264.1 + 67019 0.67 0.917217
Target:  5'- gACGGaGCGGCGgccuugcGCAGGcccccgacguaaGGCGGCGg -3'
miRNA:   3'- gUGCC-CGCCGCauu----UGUCC------------CUGUUGC- -5'
24703 5' -54.8 NC_005264.1 + 60398 0.69 0.859478
Target:  5'- cCAC-GGCGGCGUGAAgggccaggaaccacuUGGGGACGGgGu -3'
miRNA:   3'- -GUGcCCGCCGCAUUU---------------GUCCCUGUUgC- -5'
24703 5' -54.8 NC_005264.1 + 68059 0.69 0.832312
Target:  5'- gACGaGGCGGCGaGAuCGGGGAacuuuGCGa -3'
miRNA:   3'- gUGC-CCGCCGCaUUuGUCCCUgu---UGC- -5'
24703 5' -54.8 NC_005264.1 + 125041 0.7 0.779461
Target:  5'- gACGGGCGGgG-AGGCuccGGGGAaaacCAACGg -3'
miRNA:   3'- gUGCCCGCCgCaUUUG---UCCCU----GUUGC- -5'
24703 5' -54.8 NC_005264.1 + 116429 0.74 0.590193
Target:  5'- uCGCuGGgGGCGUcuggccGCGGGGGCGACGa -3'
miRNA:   3'- -GUGcCCgCCGCAuu----UGUCCCUGUUGC- -5'
24703 5' -54.8 NC_005264.1 + 157361 0.66 0.947297
Target:  5'- gGCGGGCccuGGcCGUGAuGCuGGG-CGGCGg -3'
miRNA:   3'- gUGCCCG---CC-GCAUU-UGuCCCuGUUGC- -5'
24703 5' -54.8 NC_005264.1 + 150212 0.66 0.938217
Target:  5'- --aGGGCGaGCGagugGGACGgGGGGCuGCGg -3'
miRNA:   3'- gugCCCGC-CGCa---UUUGU-CCCUGuUGC- -5'
24703 5' -54.8 NC_005264.1 + 84894 0.67 0.928193
Target:  5'- aGCGGGCcGCGcaGGAC-GGGAgGGCGg -3'
miRNA:   3'- gUGCCCGcCGCa-UUUGuCCCUgUUGC- -5'
24703 5' -54.8 NC_005264.1 + 7004 0.67 0.928193
Target:  5'- uGCGGGCGGCGccAACgugaaaguuauuGGGGuCuGCGu -3'
miRNA:   3'- gUGCCCGCCGCauUUG------------UCCCuGuUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.