miRNA display CGI


Results 1 - 20 of 26 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24704 3' -58.2 NC_005264.1 + 19259 0.66 0.824313
Target:  5'- --cGUUCccuCcGGGCCCCGGGGACGg -3'
miRNA:   3'- uuaCGAGcucGuCUUGGGGCCCCUGU- -5'
24704 3' -58.2 NC_005264.1 + 63008 0.66 0.824313
Target:  5'- cGUGCUUGGcGCAcuccagccuuACCCCGGGGuCGg -3'
miRNA:   3'- uUACGAGCU-CGUcu--------UGGGGCCCCuGU- -5'
24704 3' -58.2 NC_005264.1 + 70475 0.66 0.824313
Target:  5'- cAGUGUg-GGGUAGuGCCCagGGGGGCAg -3'
miRNA:   3'- -UUACGagCUCGUCuUGGGg-CCCCUGU- -5'
24704 3' -58.2 NC_005264.1 + 142780 0.66 0.815783
Target:  5'- -uUGCUCGcuacGCGGGGCCgCGuGGcGACAu -3'
miRNA:   3'- uuACGAGCu---CGUCUUGGgGC-CC-CUGU- -5'
24704 3' -58.2 NC_005264.1 + 10074 0.66 0.807088
Target:  5'- --aGC-CGcGGCGGAAucucCCgCCGGGGGCAu -3'
miRNA:   3'- uuaCGaGC-UCGUCUU----GG-GGCCCCUGU- -5'
24704 3' -58.2 NC_005264.1 + 63277 0.66 0.798236
Target:  5'- --gGCUCGAGagaGGAcaaccgGCCCCagucgGGGGAUg -3'
miRNA:   3'- uuaCGAGCUCg--UCU------UGGGG-----CCCCUGu -5'
24704 3' -58.2 NC_005264.1 + 132495 0.67 0.761434
Target:  5'- --gGCUCcuGCgGGGACUCgGGGGACAg -3'
miRNA:   3'- uuaCGAGcuCG-UCUUGGGgCCCCUGU- -5'
24704 3' -58.2 NC_005264.1 + 15761 0.67 0.761434
Target:  5'- uGUGCgcgCGAGCGuGGCUCCGGGcGAgCAg -3'
miRNA:   3'- uUACGa--GCUCGUcUUGGGGCCC-CU-GU- -5'
24704 3' -58.2 NC_005264.1 + 13468 0.67 0.761434
Target:  5'- --gGCUCcuGCgGGGACUCgGGGGACAg -3'
miRNA:   3'- uuaCGAGcuCG-UCUUGGGgCCCCUGU- -5'
24704 3' -58.2 NC_005264.1 + 92997 0.67 0.732614
Target:  5'- cGAUGCUCccaAGCAGGgcggccuucACCCCGGcGGCGu -3'
miRNA:   3'- -UUACGAGc--UCGUCU---------UGGGGCCcCUGU- -5'
24704 3' -58.2 NC_005264.1 + 27908 0.68 0.70302
Target:  5'- cGUGCagaUCG-GCcGAGCuCCUGGGGACGa -3'
miRNA:   3'- uUACG---AGCuCGuCUUG-GGGCCCCUGU- -5'
24704 3' -58.2 NC_005264.1 + 955 0.68 0.682981
Target:  5'- --gGCUCGAGgacuUAGAggaaGCCCCuGGGGCGg -3'
miRNA:   3'- uuaCGAGCUC----GUCU----UGGGGcCCCUGU- -5'
24704 3' -58.2 NC_005264.1 + 43489 0.68 0.682981
Target:  5'- --cGCUUGAcaAGAACCUCGGGGucGCAg -3'
miRNA:   3'- uuaCGAGCUcgUCUUGGGGCCCC--UGU- -5'
24704 3' -58.2 NC_005264.1 + 119981 0.68 0.682981
Target:  5'- --gGCUCGAGgacuUAGAggaaGCCCCuGGGGCGg -3'
miRNA:   3'- uuaCGAGCUC----GUCU----UGGGGcCCCUGU- -5'
24704 3' -58.2 NC_005264.1 + 3446 0.69 0.662776
Target:  5'- -cUGCUCGcaaAGCgccacgAGggUCUCGGGGGCGa -3'
miRNA:   3'- uuACGAGC---UCG------UCuuGGGGCCCCUGU- -5'
24704 3' -58.2 NC_005264.1 + 122473 0.69 0.662776
Target:  5'- -cUGCUCGcaaAGCgccacgAGggUCUCGGGGGCGa -3'
miRNA:   3'- uuACGAGC---UCG------UCuuGGGGCCCCUGU- -5'
24704 3' -58.2 NC_005264.1 + 58005 0.69 0.642473
Target:  5'- --gGCUC-AGCG--GCCCCGGcGGACAg -3'
miRNA:   3'- uuaCGAGcUCGUcuUGGGGCC-CCUGU- -5'
24704 3' -58.2 NC_005264.1 + 150550 0.69 0.622138
Target:  5'- --gGCUCGGGCGGGgaggGCCgUUGGGGugGg -3'
miRNA:   3'- uuaCGAGCUCGUCU----UGG-GGCCCCugU- -5'
24704 3' -58.2 NC_005264.1 + 31523 0.69 0.622138
Target:  5'- --gGCUCGGGCGGGgaggGCCgUUGGGGugGg -3'
miRNA:   3'- uuaCGAGCUCGUCU----UGG-GGCCCCugU- -5'
24704 3' -58.2 NC_005264.1 + 79434 0.7 0.59171
Target:  5'- cGUGggCGGuGCGGggUCuCCGGGGGCAg -3'
miRNA:   3'- uUACgaGCU-CGUCuuGG-GGCCCCUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.