Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 24704 | 3' | -58.2 | NC_005264.1 | + | 119981 | 0.68 | 0.682981 |
|
Target: 5'- --gGCUCGAGgacuUAGAggaaGCCCCuGGGGCGg -3' miRNA: 3'- uuaCGAGCUC----GUCU----UGGGGcCCCUGU- -5' |
|||||||
| 24704 | 3' | -58.2 | NC_005264.1 | + | 122473 | 0.69 | 0.662776 |
|
Target: 5'- -cUGCUCGcaaAGCgccacgAGggUCUCGGGGGCGa -3' miRNA: 3'- uuACGAGC---UCG------UCuuGGGGCCCCUGU- -5' |
|||||||
| 24704 | 3' | -58.2 | NC_005264.1 | + | 127216 | 1.06 | 0.002771 |
|
Target: 5'- gAAUGCUCGAGCAGAACCCCGGGGACAc -3' miRNA: 3'- -UUACGAGCUCGUCUUGGGGCCCCUGU- -5' |
|||||||
| 24704 | 3' | -58.2 | NC_005264.1 | + | 132495 | 0.67 | 0.761434 |
|
Target: 5'- --gGCUCcuGCgGGGACUCgGGGGACAg -3' miRNA: 3'- uuaCGAGcuCG-UCUUGGGgCCCCUGU- -5' |
|||||||
| 24704 | 3' | -58.2 | NC_005264.1 | + | 142780 | 0.66 | 0.815783 |
|
Target: 5'- -uUGCUCGcuacGCGGGGCCgCGuGGcGACAu -3' miRNA: 3'- uuACGAGCu---CGUCUUGGgGC-CC-CUGU- -5' |
|||||||
| 24704 | 3' | -58.2 | NC_005264.1 | + | 150550 | 0.69 | 0.622138 |
|
Target: 5'- --gGCUCGGGCGGGgaggGCCgUUGGGGugGg -3' miRNA: 3'- uuaCGAGCUCGUCU----UGG-GGCCCCugU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home