miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24704 5' -59.5 NC_005264.1 + 66375 0.66 0.778729
Target:  5'- cGUUggUGGCCGAcucgcuggaAGCCGCua-GGCUCa -3'
miRNA:   3'- -CGGuaGCCGGCU---------UCGGCGucgUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 92992 0.66 0.778729
Target:  5'- cGCCGcagcacgCGGCCGuAGCgGgGGCAGUc- -3'
miRNA:   3'- -CGGUa------GCCGGCuUCGgCgUCGUCGag -5'
24704 5' -59.5 NC_005264.1 + 60615 0.66 0.778729
Target:  5'- uGCCG-CGGCagccGGCUcgcgcaggaGCAGCAGCUUg -3'
miRNA:   3'- -CGGUaGCCGgcu-UCGG---------CGUCGUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 35596 0.66 0.777816
Target:  5'- gGCU-UCGGCCGAuGGCCGCGucuccguguccccGgGGUUCu -3'
miRNA:   3'- -CGGuAGCCGGCU-UCGGCGU-------------CgUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 154623 0.66 0.777816
Target:  5'- gGCU-UCGGCCGAuGGCCGCGucuccguguccccGgGGUUCu -3'
miRNA:   3'- -CGGuAGCCGGCU-UCGGCGU-------------CgUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 151175 0.66 0.769545
Target:  5'- cCCAUUGGCCuaGAGGCCGCuuaAGUa- -3'
miRNA:   3'- cGGUAGCCGG--CUUCGGCGucgUCGag -5'
24704 5' -59.5 NC_005264.1 + 66611 0.66 0.769545
Target:  5'- cGCCG-CGuuGCCGgcGCCGUcGCGGCcCg -3'
miRNA:   3'- -CGGUaGC--CGGCuuCGGCGuCGUCGaG- -5'
24704 5' -59.5 NC_005264.1 + 48091 0.66 0.769545
Target:  5'- aCUcgCGGCCGcgcggguucuGCaCGCGcGCGGCUCa -3'
miRNA:   3'- cGGuaGCCGGCuu--------CG-GCGU-CGUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 32148 0.66 0.769545
Target:  5'- cCCAUUGGCCuaGAGGCCGCuuaAGUa- -3'
miRNA:   3'- cGGUAGCCGG--CUUCGGCGucgUCGag -5'
24704 5' -59.5 NC_005264.1 + 133954 0.66 0.769545
Target:  5'- aGCU--UGGCCGggGUcuuCGCGGUGGCg- -3'
miRNA:   3'- -CGGuaGCCGGCuuCG---GCGUCGUCGag -5'
24704 5' -59.5 NC_005264.1 + 155235 0.66 0.766766
Target:  5'- uGCUG-CGGCgGggGaugaggaagcaucuCCGCAGCGGCg- -3'
miRNA:   3'- -CGGUaGCCGgCuuC--------------GGCGUCGUCGag -5'
24704 5' -59.5 NC_005264.1 + 36755 0.66 0.760242
Target:  5'- cGgCGcCGGCCGgcGCCGUcGCcGCUUg -3'
miRNA:   3'- -CgGUaGCCGGCuuCGGCGuCGuCGAG- -5'
24704 5' -59.5 NC_005264.1 + 79913 0.66 0.760242
Target:  5'- uGCgCGU-GGCCGAcGuCUGCGGCGGaCUCc -3'
miRNA:   3'- -CG-GUAgCCGGCUuC-GGCGUCGUC-GAG- -5'
24704 5' -59.5 NC_005264.1 + 155781 0.66 0.760242
Target:  5'- cGgCGcCGGCCGgcGCCGUcGCcGCUUg -3'
miRNA:   3'- -CgGUaGCCGGCuuCGGCGuCGuCGAG- -5'
24704 5' -59.5 NC_005264.1 + 50494 0.66 0.760242
Target:  5'- -aCGU-GGCCacGGCCGCGGcCAGUUCu -3'
miRNA:   3'- cgGUAgCCGGcuUCGGCGUC-GUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 104712 0.66 0.760242
Target:  5'- aCCAgaCGGCugcgCGAGGUcgCGCAGCAGCg- -3'
miRNA:   3'- cGGUa-GCCG----GCUUCG--GCGUCGUCGag -5'
24704 5' -59.5 NC_005264.1 + 6880 0.66 0.760242
Target:  5'- aGCCAgagCGuCCGcGAGCCGCGcagucccagcgcGCGGCUUu -3'
miRNA:   3'- -CGGUa--GCcGGC-UUCGGCGU------------CGUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 42145 0.66 0.760242
Target:  5'- gGCUuuGUCGGCgCGAGGCCuuGUuuggucccuGUAGCUCu -3'
miRNA:   3'- -CGG--UAGCCG-GCUUCGG--CGu--------CGUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 106010 0.66 0.759306
Target:  5'- aGCCA-CGaGCCGcuagcuaGGGCCGCcgcGCAGCg- -3'
miRNA:   3'- -CGGUaGC-CGGC-------UUCGGCGu--CGUCGag -5'
24704 5' -59.5 NC_005264.1 + 69775 0.66 0.750831
Target:  5'- cGCCG-CGGCCccucCCGCAGCAGaCa- -3'
miRNA:   3'- -CGGUaGCCGGcuucGGCGUCGUC-Gag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.