miRNA display CGI


Results 41 - 60 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24704 5' -59.5 NC_005264.1 + 121868 0.67 0.701448
Target:  5'- gGCCGgucgcgcUCGcGCCGucGcCCGCuGCGGCUg -3'
miRNA:   3'- -CGGU-------AGC-CGGCuuC-GGCGuCGUCGAg -5'
24704 5' -59.5 NC_005264.1 + 75296 0.67 0.722025
Target:  5'- uCCGaugCGGaCGAcuccucggaGGCCGCgGGCGGCUCa -3'
miRNA:   3'- cGGUa--GCCgGCU---------UCGGCG-UCGUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 149928 0.67 0.712262
Target:  5'- -gCGUCGGgggaggacugCGAGGCCG-GGCGGCUCg -3'
miRNA:   3'- cgGUAGCCg---------GCUUCGGCgUCGUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 132385 0.67 0.702434
Target:  5'- -aCGUCggGGCCG-AGCCGgGGCccgcGGCUCc -3'
miRNA:   3'- cgGUAG--CCGGCuUCGGCgUCG----UCGAG- -5'
24704 5' -59.5 NC_005264.1 + 51095 0.67 0.702434
Target:  5'- cGCgGUC-GCCGguGCUGCGGUcuGCUCg -3'
miRNA:   3'- -CGgUAGcCGGCuuCGGCGUCGu-CGAG- -5'
24704 5' -59.5 NC_005264.1 + 13358 0.67 0.702434
Target:  5'- -aCGUCggGGCCG-AGCCGgGGCccgcGGCUCc -3'
miRNA:   3'- cgGUAG--CCGGCuUCGGCgUCG----UCGAG- -5'
24704 5' -59.5 NC_005264.1 + 55940 0.67 0.711282
Target:  5'- aGCCGcggcaguaguuucUCGGCUuAAGCCGCuGC-GUUCg -3'
miRNA:   3'- -CGGU-------------AGCCGGcUUCGGCGuCGuCGAG- -5'
24704 5' -59.5 NC_005264.1 + 102115 0.67 0.692548
Target:  5'- gGCUggCGGCgguaCGAGGCCGCGGCcaacaaccuGCUg -3'
miRNA:   3'- -CGGuaGCCG----GCUUCGGCGUCGu--------CGAg -5'
24704 5' -59.5 NC_005264.1 + 25133 0.67 0.692548
Target:  5'- cGCCGugucUCGGCCGAguaguuGGCCGUgAGCgAGgaCg -3'
miRNA:   3'- -CGGU----AGCCGGCU------UCGGCG-UCG-UCgaG- -5'
24704 5' -59.5 NC_005264.1 + 140896 0.67 0.692548
Target:  5'- gGCCuuuugCGGCCcGAGUCGCcgacCAGCUCc -3'
miRNA:   3'- -CGGua---GCCGGcUUCGGCGuc--GUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 16463 0.67 0.682614
Target:  5'- gGUCAUCGuuCCGAcgacgcAGCCGCGGUGGCc- -3'
miRNA:   3'- -CGGUAGCc-GGCU------UCGGCGUCGUCGag -5'
24704 5' -59.5 NC_005264.1 + 109789 0.67 0.681618
Target:  5'- uGCCGacgcagacUCGGCCGggGCCauuuccaugacguGCGuGCAGgUUg -3'
miRNA:   3'- -CGGU--------AGCCGGCuuCGG-------------CGU-CGUCgAG- -5'
24704 5' -59.5 NC_005264.1 + 9724 0.67 0.67264
Target:  5'- aGCCAUUGuGCCc--GCCGCGGCAaacugcggGCUUc -3'
miRNA:   3'- -CGGUAGC-CGGcuuCGGCGUCGU--------CGAG- -5'
24704 5' -59.5 NC_005264.1 + 30902 0.67 0.712262
Target:  5'- -gCGUCGGgggaggacugCGAGGCCG-GGCGGCUCg -3'
miRNA:   3'- cgGUAGCCg---------GCUUCGGCgUCGUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 73884 0.67 0.712262
Target:  5'- cGCCGUC-GCCGAcuCuCGCAGCAgGCg- -3'
miRNA:   3'- -CGGUAGcCGGCUucG-GCGUCGU-CGag -5'
24704 5' -59.5 NC_005264.1 + 86314 0.67 0.722025
Target:  5'- uGCCAgauaCcGCCGAAGCgGCGGUAGacggUCg -3'
miRNA:   3'- -CGGUa---GcCGGCUUCGgCGUCGUCg---AG- -5'
24704 5' -59.5 NC_005264.1 + 66474 0.67 0.719104
Target:  5'- cGCCG-CGGCCaGAcucaaugcuuggcgGGCugCGCGGCGcGCUCg -3'
miRNA:   3'- -CGGUaGCCGG-CU--------------UCG--GCGUCGU-CGAG- -5'
24704 5' -59.5 NC_005264.1 + 103710 0.67 0.722025
Target:  5'- gGCCAguggagcggCGGCgCGGcaucAGCgGCGGCGGC-Cg -3'
miRNA:   3'- -CGGUa--------GCCG-GCU----UCGgCGUCGUCGaG- -5'
24704 5' -59.5 NC_005264.1 + 104833 0.67 0.722025
Target:  5'- gGCCuGUCcGCCGggGCCGCugAGCcacGGC-Cg -3'
miRNA:   3'- -CGG-UAGcCGGCuuCGGCG--UCG---UCGaG- -5'
24704 5' -59.5 NC_005264.1 + 2842 0.67 0.701448
Target:  5'- gGCCGgucgcgcUCGcGCCGucGcCCGCuGCGGCUg -3'
miRNA:   3'- -CGGU-------AGC-CGGCuuC-GGCGuCGUCGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.