miRNA display CGI


Results 41 - 60 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24704 5' -59.5 NC_005264.1 + 71348 0.7 0.504248
Target:  5'- cGCC----GCCGAAaccCCGCAGCGGCUCu -3'
miRNA:   3'- -CGGuagcCGGCUUc--GGCGUCGUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 79399 0.69 0.572428
Target:  5'- cGCCGcgggCGuGgCGAGGCCGCGGCGGa-- -3'
miRNA:   3'- -CGGUa---GC-CgGCUUCGGCGUCGUCgag -5'
24704 5' -59.5 NC_005264.1 + 76026 0.69 0.572428
Target:  5'- --aGUCGGCCGAcgacAGCgGCAGCGGa-- -3'
miRNA:   3'- cggUAGCCGGCU----UCGgCGUCGUCgag -5'
24704 5' -59.5 NC_005264.1 + 5273 0.69 0.572428
Target:  5'- aGUCG-CGGCCGGacGGCgggGCGGCGGCUg -3'
miRNA:   3'- -CGGUaGCCGGCU--UCGg--CGUCGUCGAg -5'
24704 5' -59.5 NC_005264.1 + 158569 0.69 0.571435
Target:  5'- aGCCAUgcaGGCCGAAcagacucGCugCGCGGCGGCa- -3'
miRNA:   3'- -CGGUAg--CCGGCUU-------CG--GCGUCGUCGag -5'
24704 5' -59.5 NC_005264.1 + 31792 0.69 0.56252
Target:  5'- cGCCuaagggCGGCgGucGCCGCcGCAGgUCg -3'
miRNA:   3'- -CGGua----GCCGgCuuCGGCGuCGUCgAG- -5'
24704 5' -59.5 NC_005264.1 + 50310 0.69 0.56252
Target:  5'- gGCgGUuaCGGCCuGGAGCCGCGaguacGCGGCgUCg -3'
miRNA:   3'- -CGgUA--GCCGG-CUUCGGCGU-----CGUCG-AG- -5'
24704 5' -59.5 NC_005264.1 + 69850 0.69 0.552659
Target:  5'- cGCUA-CGGCCGguGCUGCGGC-GCg- -3'
miRNA:   3'- -CGGUaGCCGGCuuCGGCGUCGuCGag -5'
24704 5' -59.5 NC_005264.1 + 127357 0.69 0.572428
Target:  5'- aGCCGUCG--CGAucGGCCGCGGCA-CUCu -3'
miRNA:   3'- -CGGUAGCcgGCU--UCGGCGUCGUcGAG- -5'
24704 5' -59.5 NC_005264.1 + 29123 0.69 0.582377
Target:  5'- gGCUGUCGuGCCaGAGGCagcaccagugCGCGGCGGCa- -3'
miRNA:   3'- -CGGUAGC-CGG-CUUCG----------GCGUCGUCGag -5'
24704 5' -59.5 NC_005264.1 + 80664 0.69 0.552659
Target:  5'- gGCCG-CcGCCGAccGGCCGCacGGCAGUUUg -3'
miRNA:   3'- -CGGUaGcCGGCU--UCGGCG--UCGUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 83439 0.69 0.552659
Target:  5'- cGCCG-CGGCCucgccacGcCCGCGGCGGUUCu -3'
miRNA:   3'- -CGGUaGCCGGcuu----C-GGCGUCGUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 144829 0.69 0.559557
Target:  5'- aCCG-CGGCCGAcccgccgccgucagAGCCGguGcCGGCUUu -3'
miRNA:   3'- cGGUaGCCGGCU--------------UCGGCguC-GUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 150818 0.69 0.56252
Target:  5'- cGCCuaagggCGGCgGucGCCGCcGCAGgUCg -3'
miRNA:   3'- -CGGua----GCCGgCuuCGGCGuCGUCgAG- -5'
24704 5' -59.5 NC_005264.1 + 124300 0.69 0.572428
Target:  5'- aGUCG-CGGCCGGacGGCgggGCGGCGGCUg -3'
miRNA:   3'- -CGGUaGCCGGCU--UCGg--CGUCGUCGAg -5'
24704 5' -59.5 NC_005264.1 + 91873 0.69 0.576403
Target:  5'- -aCAaUGGUCGAgguagcggggugguuGGCCGCGGCAGCg- -3'
miRNA:   3'- cgGUaGCCGGCU---------------UCGGCGUCGUCGag -5'
24704 5' -59.5 NC_005264.1 + 36718 0.69 0.59236
Target:  5'- uGCCAUCGGCUc-AGCCGCcGC-GCa- -3'
miRNA:   3'- -CGGUAGCCGGcuUCGGCGuCGuCGag -5'
24704 5' -59.5 NC_005264.1 + 129035 0.69 0.602371
Target:  5'- uGCCggCGaGCCGGuccaaAGCgGCGugcGCGGCUCg -3'
miRNA:   3'- -CGGuaGC-CGGCU-----UCGgCGU---CGUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 77202 0.69 0.59236
Target:  5'- gGCCAUcgCGGCCauuAGCgGCuGCAGCa- -3'
miRNA:   3'- -CGGUA--GCCGGcu-UCGgCGuCGUCGag -5'
24704 5' -59.5 NC_005264.1 + 21200 0.69 0.59236
Target:  5'- aUCGUCGGCCGcAgugguacuuucGGCCGCGaCGGCUUu -3'
miRNA:   3'- cGGUAGCCGGC-U-----------UCGGCGUcGUCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.