miRNA display CGI


Results 1 - 20 of 146 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24704 5' -59.5 NC_005264.1 + 127252 1.1 0.00117
Target:  5'- gGCCAUCGGCCGAAGCCGCAGCAGCUCc -3'
miRNA:   3'- -CGGUAGCCGGCUUCGGCGUCGUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 8225 1.1 0.00117
Target:  5'- gGCCAUCGGCCGAAGCCGCAGCAGCUCc -3'
miRNA:   3'- -CGGUAGCCGGCUUCGGCGUCGUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 17676 0.87 0.047036
Target:  5'- aGCCucaggCGcaGCCGAGGCCGCGGCGGCUCg -3'
miRNA:   3'- -CGGua---GC--CGGCUUCGGCGUCGUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 65319 0.75 0.278495
Target:  5'- uGCCA-C-GCCacAGCCGCGGCAGCUCc -3'
miRNA:   3'- -CGGUaGcCGGcuUCGGCGUCGUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 65246 0.75 0.284991
Target:  5'- cGCCG-CGGCCGAGGaaGCGGUacgguucuAGCUCu -3'
miRNA:   3'- -CGGUaGCCGGCUUCggCGUCG--------UCGAG- -5'
24704 5' -59.5 NC_005264.1 + 45906 0.74 0.312172
Target:  5'- gGCCAUCGa-CGGAGCCG-AGCAGCUa -3'
miRNA:   3'- -CGGUAGCcgGCUUCGGCgUCGUCGAg -5'
24704 5' -59.5 NC_005264.1 + 53128 0.74 0.326483
Target:  5'- gGCCGaggaGGCCGGGcaaucuGCCGCGGCAaaGCUCa -3'
miRNA:   3'- -CGGUag--CCGGCUU------CGGCGUCGU--CGAG- -5'
24704 5' -59.5 NC_005264.1 + 81228 0.74 0.333819
Target:  5'- -gCAUCGGCCGucccuGgCGCAGCGGCa- -3'
miRNA:   3'- cgGUAGCCGGCuu---CgGCGUCGUCGag -5'
24704 5' -59.5 NC_005264.1 + 69770 0.73 0.341275
Target:  5'- uGCCAcgaauUCgGGCgGAGGCCGCAugGCAGCg- -3'
miRNA:   3'- -CGGU-----AG-CCGgCUUCGGCGU--CGUCGag -5'
24704 5' -59.5 NC_005264.1 + 36539 0.73 0.341275
Target:  5'- aGCCAUCGGCCGcgcGCCcgaaAGCGGCa- -3'
miRNA:   3'- -CGGUAGCCGGCuu-CGGcg--UCGUCGag -5'
24704 5' -59.5 NC_005264.1 + 49804 0.73 0.348851
Target:  5'- cGCCG-CGGCCcagucgcGGCCGCGGaaaAGCUCa -3'
miRNA:   3'- -CGGUaGCCGGcu-----UCGGCGUCg--UCGAG- -5'
24704 5' -59.5 NC_005264.1 + 138660 0.73 0.348851
Target:  5'- cGCCAgacuuuacCGaCCGcGGCCGCAGCAGcCUCg -3'
miRNA:   3'- -CGGUa-------GCcGGCuUCGGCGUCGUC-GAG- -5'
24704 5' -59.5 NC_005264.1 + 6979 0.73 0.351915
Target:  5'- cGUCGUCGuGUCGGucuccuccucggcguGGcCCGCGGCGGCUCc -3'
miRNA:   3'- -CGGUAGC-CGGCU---------------UC-GGCGUCGUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 126011 0.73 0.364359
Target:  5'- cGCUGUCGGUcuccuccucggCGuGGcCCGCGGCGGCUCc -3'
miRNA:   3'- -CGGUAGCCG-----------GCuUC-GGCGUCGUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 27825 0.72 0.388501
Target:  5'- cGCCAUUGGCCuaGAucgcgccacuGUCGCGGCGGCa- -3'
miRNA:   3'- -CGGUAGCCGG--CUu---------CGGCGUCGUCGag -5'
24704 5' -59.5 NC_005264.1 + 141482 0.72 0.405168
Target:  5'- uCCAcCGGCCGAGGCgGCccgggacgaacGGCAGCg- -3'
miRNA:   3'- cGGUaGCCGGCUUCGgCG-----------UCGUCGag -5'
24704 5' -59.5 NC_005264.1 + 2990 0.72 0.422279
Target:  5'- uCCAUCGagcGCCGAcugGGCCgGCGGCucGGCUCu -3'
miRNA:   3'- cGGUAGC---CGGCU---UCGG-CGUCG--UCGAG- -5'
24704 5' -59.5 NC_005264.1 + 94517 0.72 0.422279
Target:  5'- aGCCGUCGGCCacgugGGAGg-GCAGCGGCg- -3'
miRNA:   3'- -CGGUAGCCGG-----CUUCggCGUCGUCGag -5'
24704 5' -59.5 NC_005264.1 + 16987 0.71 0.44874
Target:  5'- cGCCAUUGGCCcaauaaCGC-GCAGCUCg -3'
miRNA:   3'- -CGGUAGCCGGcuucg-GCGuCGUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 148898 0.71 0.44874
Target:  5'- cGCCGcgUGGCauaGAcuuGCUGCGGCAGCUUu -3'
miRNA:   3'- -CGGUa-GCCGg--CUu--CGGCGUCGUCGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.