miRNA display CGI


Results 21 - 40 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24704 5' -59.5 NC_005264.1 + 159967 0.71 0.457763
Target:  5'- cGCCGcgcccCGGUCGAucgcAGCCGCAGCgGGCg- -3'
miRNA:   3'- -CGGUa----GCCGGCU----UCGGCGUCG-UCGag -5'
24704 5' -59.5 NC_005264.1 + 40940 0.71 0.457763
Target:  5'- cGCCGcgcccCGGUCGAucgcAGCCGCAGCgGGCg- -3'
miRNA:   3'- -CGGUa----GCCGGCU----UCGGCGUCG-UCGag -5'
24704 5' -59.5 NC_005264.1 + 147243 0.71 0.466881
Target:  5'- --gAUauGCCGGAGCCGCAGCuGCg- -3'
miRNA:   3'- cggUAgcCGGCUUCGGCGUCGuCGag -5'
24704 5' -59.5 NC_005264.1 + 52673 0.71 0.466881
Target:  5'- uGCCAggauaGGCCccaAAGCCGCGGCGGgUUu -3'
miRNA:   3'- -CGGUag---CCGGc--UUCGGCGUCGUCgAG- -5'
24704 5' -59.5 NC_005264.1 + 24154 0.71 0.476093
Target:  5'- aCCGUCGGCCuGGuAGCUGUgaAGCGGCa- -3'
miRNA:   3'- cGGUAGCCGG-CU-UCGGCG--UCGUCGag -5'
24704 5' -59.5 NC_005264.1 + 101830 0.71 0.476093
Target:  5'- cGCC--UGGCCGAAGCCGaGGCAGa-- -3'
miRNA:   3'- -CGGuaGCCGGCUUCGGCgUCGUCgag -5'
24704 5' -59.5 NC_005264.1 + 16910 0.71 0.485394
Target:  5'- cCCGUCGGCCGcggacgauGGCgGCGGC-GUUCu -3'
miRNA:   3'- cGGUAGCCGGCu-------UCGgCGUCGuCGAG- -5'
24704 5' -59.5 NC_005264.1 + 71811 0.71 0.485394
Target:  5'- cGCauagCGGCCGAAGCCGCccGCGGg-- -3'
miRNA:   3'- -CGgua-GCCGGCUUCGGCGu-CGUCgag -5'
24704 5' -59.5 NC_005264.1 + 71348 0.7 0.504248
Target:  5'- cGCC----GCCGAAaccCCGCAGCGGCUCu -3'
miRNA:   3'- -CGGuagcCGGCUUc--GGCGUCGUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 46268 0.7 0.504248
Target:  5'- uGCCAUgaacuuGCUGAGcGCCGCAGCucGCUCa -3'
miRNA:   3'- -CGGUAgc----CGGCUU-CGGCGUCGu-CGAG- -5'
24704 5' -59.5 NC_005264.1 + 82175 0.7 0.504248
Target:  5'- uGCCGUgCGGCCGGu-CgGCGGCGGCcaUCg -3'
miRNA:   3'- -CGGUA-GCCGGCUucGgCGUCGUCG--AG- -5'
24704 5' -59.5 NC_005264.1 + 92715 0.7 0.504248
Target:  5'- uGCCGcacGCgGGAGUaCGCGGCAGCUCg -3'
miRNA:   3'- -CGGUagcCGgCUUCG-GCGUCGUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 79567 0.7 0.523413
Target:  5'- gGCCuugCGGCCGAAauugaaguucGCCGCGcCAGCg- -3'
miRNA:   3'- -CGGua-GCCGGCUU----------CGGCGUcGUCGag -5'
24704 5' -59.5 NC_005264.1 + 129224 0.7 0.523413
Target:  5'- cGCCaAUCuGGCCGAacuuuAGCgGCGGCAaGcCUCg -3'
miRNA:   3'- -CGG-UAG-CCGGCU-----UCGgCGUCGU-C-GAG- -5'
24704 5' -59.5 NC_005264.1 + 77654 0.7 0.523413
Target:  5'- --uGUCGaaGCgGGAGCCGUAGCAGCa- -3'
miRNA:   3'- cggUAGC--CGgCUUCGGCGUCGUCGag -5'
24704 5' -59.5 NC_005264.1 + 128044 0.7 0.532129
Target:  5'- cGCUAcCGcGUCGAuGGCCGCccgcaugAGCGGCUCa -3'
miRNA:   3'- -CGGUaGC-CGGCU-UCGGCG-------UCGUCGAG- -5'
24704 5' -59.5 NC_005264.1 + 67289 0.7 0.5331
Target:  5'- aGCgCGUCGGCuuCGAAGgguaUCGCGGCGGCg- -3'
miRNA:   3'- -CG-GUAGCCG--GCUUC----GGCGUCGUCGag -5'
24704 5' -59.5 NC_005264.1 + 69041 0.7 0.5331
Target:  5'- aGUCGaucucuUUGGCCGcGGCCGCcgGGCAGgUCa -3'
miRNA:   3'- -CGGU------AGCCGGCuUCGGCG--UCGUCgAG- -5'
24704 5' -59.5 NC_005264.1 + 116399 0.7 0.5331
Target:  5'- uUCGUCGGCUcucgcuGAGcCCGCGGCAGgUCg -3'
miRNA:   3'- cGGUAGCCGGc-----UUC-GGCGUCGUCgAG- -5'
24704 5' -59.5 NC_005264.1 + 64409 0.7 0.542851
Target:  5'- gGCCAa-GGCCGAcGCCGCGGgcaCGGCg- -3'
miRNA:   3'- -CGGUagCCGGCUuCGGCGUC---GUCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.